ID   AJ422132; SV 1; circular; genomic DNA; STD; VRL; 2800 BP.
XX
AC   AJ422132;
XX
DT   19-DEC-2001 (Rel. 70, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   South African cassava mosaic virus-[M12] complete DNA-A, isolate M12
XX
KW   AC1 gene; AC2 gene; AC3 gene; AV1 gene; AV2 gene; coat protein.
XX
OS   South African cassava mosaic virus-[M12]
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus;
OC   South African cassava mosaic virus.
XX
RN   [1]
RP   1-2800
RA   Robinson D.J.;
RT   ;
RL   Submitted (17-DEC-2001) to the INSDC.
RL   Robinson D.J., Host-Parasite Co-evolution, Scottish Crop Research
RL   Institute, Invergowrie, Dundee, DD2 5DA, UNITED KINGDOM.
XX
RN   [2]
RA   Ranomenjanahary S., Rabindran R., Robinson D.J.;
RT   "Occurrence of three distinct begomoviruses in cassava in Madagascar";
RL   Unpublished.
XX
DR   MD5; 21c5d6e4d4d33153d57f3811e0ef3332.
DR   EuropePMC; PMC1079959; 15784145.
DR   EuropePMC; PMC5012068; 27600545.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2800
FT                   /organism="South African cassava mosaic virus-[M12]"
FT                   /segment="DNA-A"
FT                   /host="Cassava"
FT                   /isolate="M12"
FT                   /mol_type="genomic DNA"
FT                   /country="Madagascar"
FT                   /db_xref="taxon:223322"
FT   CDS             173..523
FT                   /gene="AV2"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UYY7"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UYY7"
FT                   /protein_id="CAD19505.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLVRDL
FT                   ICVLRARDYVEATRRYNYFHSRFEGASKAELRQPVQQPCYCPHCPRHKQASSMDVPAHV
FT                   SKAQNVQNVQKS"
FT   CDS             333..1109
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8UYY6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UYY6"
FT                   /protein_id="CAD19506.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPFSSRATVPIVQGTNKRRAW
FT                   TFRPMYRKPRMYRTYRSPDVPRGCEGPCKVQSYEQRDDVKHTGAVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYVLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDN
FT                   EPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALIKRFFRVNNHVVYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT   CDS             complement(1106..1510)
FT                   /gene="AC3"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UYY5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UYY5"
FT                   /protein_id="CAD19507.1"
FT                   /translation="MDSRTGELITAHQAKNGVFIWEITNPLYFEITNHDKRPGNMNHDI
FT                   ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLRVFRYQVLKYLDMIGVISINT
FT                   VLKAVDHVLYDVLLNTLQVTEQHEIKFNLY"
FT   CDS             complement(1251..1658)
FT                   /gene="AC2"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UYY4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UYY4"
FT                   /protein_id="CAD19508.1"
FT                   /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI
FT                   DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ
FT                   HQEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT   CDS             complement(1567..2646)
FT                   /gene="AC1"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UYY3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UYY3"
FT                   /protein_id="CAD19509.1"
FT                   /translation="MPRAGRFSIKAKNYFLTYPKCNLSKEAALDQLRQLQTPTNKLFIK
FT                   ICRELHENGEPHLHALIQFEGKYNCTNPRFFDLISPSRSAHFHPNIQGAKSSSDVKSYL
FT                   DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNAASKTEALNVIRELAPKDFVLQFH
FT                   NLNSNLDRIFQEPPIPYISPFLSSSFTNVPEELEVWVSENVMGSAARPWRPSSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTLHEPL
FT                   FSSAYQSPTPHSEDQSPQT"
XX
SQ   Sequence 2800 BP; 706 A; 572 C; 713 G; 809 T; 0 other;
     accggatggc cgcgcccgaa aaagcaggtg gaccccatta gatggccgcg cccgttaaag        60
     aaagtggtcc ccgcgcacgt gtctttgttg gccaatcata tttacgcgtg aaagcctaaa       120
     tatttgttgt tgtcgttata tacttcgtcg cgaagtagtt gagcgcgtca acatgtggga       180
     tccattgttg aacgagttcc ccgaatctgt acacggtttt cgctgtatgc ttgctattaa       240
     atatttgcag gccgtggagg aaacctacga gcccaatacg ttgggccacg atctagtccg       300
     tgatctcatc tgtgttctcc gagcccgtga ctatgtcgaa gcgacccgcc gatataatta       360
     tttccactcc cgcttcgaag gtgcgtcgaa ggctgaactt cgacagcccg ttcagcagcc       420
     gtgctactgt ccccattgtc caaggcacaa acaagcgtcg agcatggacg ttccggccca       480
     tgtatcgaaa gcccagaatg tacagaacgt acagaagtcc tgatgttcct cgaggatgtg       540
     aaggtccatg taaggtacaa tcctatgaac agagagacga tgttaagcac accggtgctg       600
     ttcgttgtgt cagtgatgtt acgcgtggtt cgggtattac tcatagggta gggaagagat       660
     tttgtgttaa gtcaatatat gttttaggaa agatctggat ggatgaaaat atcaagaagc       720
     agaatcacac taatcaggtc atgtttttct tagtgcgtga tagaaggccc tatggcacaa       780
     gcccaatgga tttcggccag gtttttaata tgtttgataa tgagcccagt acagcgacta       840
     ttaagaatga tttgcgagat aggttccaag tgttgcggaa attccatgcc accgtggtag       900
     gtggtccctc gggtatgaag gagcaggcgt tgattaagag gttttttagg gttaataatc       960
     atgtggtgta taatcatcaa gaggctgcga agtatgagaa ccatacggag aatgcgttgt      1020
     tgttgtatat ggcatgtacg catgcctcta atcctgtgta tgctacgctg aaaatacgca      1080
     tctatttcta tgatgcagta acaaattaat aaaggttgaa ttttatttca tgttgctccg      1140
     taacctggag tgtgtttagt aatacatcgt acagaacatg atcaacagct ttaagtacag      1200
     tgttaatgga aataacgcct atcatatcta aatacttgag cacttgatat ctaaatactc      1260
     ttaagaaaag accagtcgga ggccgtaagg tcgtccagac cttgaagttg agaaaacact      1320
     tgtgaatccc caatgccttc ctgatgttgt ggttgaaccg tatctggagt gtgatgatgt      1380
     cgtggttcat gttccctggc ctcttgtcgt ggttggtgat ttcgaaatag aggggatttg      1440
     ttatttccca gataaaaacg ccattctttg cttgatgcgc agtgatgagt tcccctgtgc      1500
     gagaatccat ggttgatgca gtcgatatgg agatagaacg agcagccgca ttcgaggtcg      1560
     accctcctac gtctgagggc tctggtcttc gctgtgcggt gttggacttt gataggcact      1620
     tgagaacaat ggctcgtgga gggtgacgaa ggtggcattc tttaaagccc aggctttaag      1680
     ggactgattc ttttcctcgt ccagaaactc tttatatgat gatgttggtc ctggattgca      1740
     gaggaagata gtgggaatgc cgcctttaat ttgaatcggc tttccgtatt ttgtattgct      1800
     ttgccaatcc ctttgggccc ccatgaattc tttgaagtgt tttaggtagt gggggtcgac      1860
     gtcatcaatg acgttgtacc atgcgtcgtt gctgtagacc tttggactaa gatccaggtg      1920
     tccacataaa tagttatgtg gtcccagaga tcgggcccac atcgtcttcc ctgtcctact      1980
     atcgccctcg ataacgatac tactcggtct ccatggccgc gcagcggaac ccatgacgtt      2040
     ctcggaaacc cagacctcaa gttcctcagg aacattagtg aaagaagaag aaagaaaggg      2100
     agaaatataa ggtatcggag gctcctgaaa aattctatct aaattgctat ttaaattatg      2160
     aaactgtaaa acaaaatctt ttggggctag ttcccgtatt acattaagag cctccgtctt      2220
     acttgctgcg ttaagagcct tggcgtaagc gtcattggct gattgttgtc ctccccgggc      2280
     agatcgtccg tcgatctgaa actcgcccca ttggatggtg tctccgtcct tgtccagata      2340
     ggacttaacg tcagagctgg atttagctcc ctgaatgttt ggatggaaat gtgcggatct      2400
     ggaaggggat atgaggtcga agaatcgtgg attggtacaa ttgtactttc cctcgaactg      2460
     aatgagggca tgcaaatgag gttccccatt ttcatgtaat tctctgcaga tcttgatgaa      2520
     caatttattt gtcggtgttt ggagttgtcg gagttgatct aatgccgcct ctttcgatag      2580
     attgcatttg ggatacgtga ggaaataatt tttggctttg atgctaaaac gaccagccct      2640
     tggcatgttt gctgtcgtat agcaattggg gggcactcaa agtctgtagc aatcggggga      2700
     atgggggggc aatttatatg atgcccccca aatggcattt gtgtaaattc ttaatgaatt      2760
     ttgaatttca aacggggaaa gcggccatcc gtctaatatt                            2800
//