Dbfetch
ID AJ420316; SV 1; circular; genomic DNA; STD; VRL; 2730 BP. XX AC AJ420316; XX DT 04-JAN-2002 (Rel. 70, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Tomato yellow leaf curl China virus-Tb[Y36] complete genome, isolate Y36 XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein; KW complete genome. XX OS Tomato yellow leaf curl China virus-Tb[Y36] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2730 RA Zhou X.; RT ; RL Submitted (16-NOV-2001) to the INSDC. RL Zhou X., Zhejiang University, Institute of Biotechnology, Kaixuan Road 268, RL Hangzhou, Zhejiang, 310029, CHINA. XX RN [2] RA Xie Y., Zhou X., Li G.; RT "Antigenic and genomic variation of tobacco begomoviruses in Yunnan, RT China"; RL Chin. Sci. Bull. 48(8):766-770(2003). XX DR MD5; ef8dfc16a72f96322187e47fe01f496c. DR EuropePMC; PMC2170441; 17963488. DR EuropePMC; PMC533896; 15564504. XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Tomato yellow leaf curl China virus-Tb[Y36]" FT /isolate="Y36" FT /mol_type="genomic DNA" FT /country="China:Yunnan" FT /db_xref="taxon:221530" FT CDS 129..476 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q777T6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q777T6" FT /protein_id="CAD12399.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARDYGEASRRYSHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNVVKQAHVS FT EAHDVPDVQKP" FT CDS 289..1059 FT /gene="AV1" FT /product="AV1 protein" FT /function="coat protein" FT /db_xref="GOA:Q8UYP4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8UYP4" FT /protein_id="CAD12400.1" FT /translation="MAKRPVDIVISTPASKVRRRLNFDSPYTGRAVAPTVRVTRRQMWS FT NRPMYRKPMMYRMYRSPDVPRGCEGPCKVQSYEARHDVSHTGKVICVSDVTRGNGITHR FT VGKRFCIKSIYVIGKIWMDENIKVKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEP FT STATVKNDLRDRFQVRRKFYSTVTGGQYACKEQALVKRFIRVNTHVVYNHQEQAKYENH FT TENALLLYMVSTHASNPVYATLKVRIYFYDSQMN" FT CDS complement(1056..1460) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q8UYP3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8UYP3" FT /protein_id="CAD12401.1" FT /translation="MDSRTGELLIATQSENGVYIWTVKNPLYFKITKHHERPFLRNHDI FT ITLQVQFNYNLRKALGIHKCFLTCQIWTHLHPQTSHFLRVFKYQFIKYLDRLGVISINN FT CIRAFRYVLYDVLNGTIDVIENHDIKFNIY" FT CDS complement(1201..1605) FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q8UYP2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8UYP2" FT /protein_id="CAD12402.1" FT /translation="MRSSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALG FT CHNHGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQTPRETIPEEPRHHHITSPIQLQP FT EESVGDTQMFSNLPNLDSFTSSDLAFLKSI" FT CDS complement(1508..2593) FT /gene="AC1" FT /product="AC1 protein" FT /function="Rep protein" FT /db_xref="GOA:Q8UYP1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8UYP1" FT /protein_id="CAD12403.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQTLETPVNKLFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPHRSTHFHPNIQGAKSSTDVKSYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEEYISPFSSSSFDQVPEELDEWAVDNVVSAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAVKNAIFVTLNGPL FT YSGSYQGATPNRQEDNQTTTS" FT CDS complement(2143..2436) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8UYP0" FT /protein_id="CAD12404.1" FT /translation="MGLLTCMFSSNSKENSNVKIKDSSISHPHTGQHISIRTFKELKAQ FT QMSNPTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2730 BP; 725 A; 530 C; 609 G; 866 T; 0 other; accggatggc cgcgcgattt ttttaaagtg gtccccatgt gcgtgtttgt ccaatagtat 60 gcgctcctca aagcttattt atgaaatggt cccctataaa acttagcccc cacgtattta 120 tgttaaagat gtgggatcca ttgcttaatg agttccctga aaccgtgcac ggttttaggt 180 gtatgttagc aattaagtat ttgcagttag tcgaaaatac atactctccc gatacattag 240 gttacgattt aatccgtgat ttaatttcag ttatccgtgc tagagactat ggcgaagcgt 300 cccgtcgata tagtcatttc cactcccgcc tcgaaggtgc gtcgccggct gaacttcgac 360 agcccctata cgggtcgtgc tgttgccccc actgtccgcg tcaccagaag acaaatgtgg 420 tcaaacaggc ccatgtatcg gaagcccatg atgtaccgga tgtacagaag ccctgatgtt 480 ccaagggggt gtgaaggccc atgtaaagtt caatcgtatg aggcccgtca tgatgtgtcg 540 catactggta aggttatttg tgtatcggat gttactcgtg gtaatggaat tactcaccgt 600 gttggtaaga ggttctgtat taaatccatt tacgtcattg ggaagatatg gatggacgag 660 aatattaaag tgaagaatca cacgaatact gtaatgtttt tccttgttag agatcgacgt 720 cctagtggta cacctatgga ttttcaacaa gtgtttaatt gttatgacaa tgaacccagc 780 actgctactg taaaaaacga tttaagggat cgttttcaag ttcgtcgtaa attctattct 840 acggttacgg gcggacagta tgcgtgtaag gagcaggctt tggtgaagag attcattcgt 900 gttaatactc atgttgtcta caatcatcaa gaacaggcga agtacgagaa tcatactgag 960 aatgcattat tgttgtatat ggtgtctact catgcgagta atcctgtata tgcgactttg 1020 aaagtccgca tctatttcta tgattcacaa atgaattaat aaatattgaa ttttatatca 1080 tgattttcaa ttacatctat tgttccattc aatacatcgt ataatacata tctaaaagcc 1140 ctaatacaat tgttaatgct aatcacgcct aatctatcta aatatttaat aaattggtat 1200 ttaaatactc ttaagaaatg cgaggtctga ggatgtaaat gagtccagat ttggcaggtt 1260 agaaaacatt tgtgtatccc caacgctttc ctcaggttgt agttgaattg gacttgtaat 1320 gtgatgatgt cgtggttcct caggaatggt ctctcgtggt gtttggttat cttgaaatat 1380 aggggatttt tgaccgtcca gatatacacg ccattctctg attgagttgc aatgagtagt 1440 tccccggtgc gtgaatccat gattgtgaca gcctaaagca acgaaatatg aacagccaca 1500 aggtagatca actcgtcgtc gtctggttgt cttcttggcg attcggtgtt gcaccttgat 1560 aggaacctga gtagagtggc ccgttgaggg tgacgaagat cgcattcttt actgcccagt 1620 ttcgaagtgc ggaattcttt tcctcttcta gatactcttt atagctggaa ttgggtcctg 1680 gattgcagag gaagatagtg gggatcccgc ctttaatttg aactggtttt ccgtatttgg 1740 tgttgctttg ccagtccctt tgggccccca tgaattcttt aaagtgcttt aagtagtgcg 1800 gatctacgtc atcaatgacg ttgaaccaag catcattact gtacaccttt gggcttagat 1860 ctaaatgacc acacaaataa ttatgtggtc ctaatgacct ggcccacatc gtcttccccg 1920 ttctactatc accctctatg actatactta ccggtcttaa aggccgcgca gcggcactga 1980 caacattatc gaccgcccat tcatcaagtt cttcgggaac ttggtcaaaa gaagaggaag 2040 aaaaaggaga aatatattcc tccattggag gagtaaaaat cctatctaaa ttactattta 2100 aattatgaaa ttgtaaaaca aaatctttag gagccttctc ccttagtata ttgagggccg 2160 aagctttgga ccctgaattg attgcctcgg catatgcgtc gttggcagat tggcaacctc 2220 ctctagccga tcttccatcg atctggaaaa ctccatgatc aagcacgtct ccgtcttttt 2280 ccatgtagga tttgacatct gttgagcttt tagctccttg aatgttcgga tggaaatgtg 2340 ttgacctgtg tggggatgtg agatcgaaga atctttgatt tttacattgg aattttcctt 2400 cgaattggat gagaacatgc aggtgaggag tcccatcttc gtgtagttct ctacagattc 2460 tgatgaatag tttatttact ggggtttcta gggtttgaat ttgggaaagt gcctcttctt 2520 tagtgagaga gcagtgtgga tatgttagga aataattctt ggcatttatt ctgaatttat 2580 ttgggggagc cattgactgg tcaatcggtg tctctcaaac ttggctatgc aaatggtgtc 2640 tggggtctta tttatatgtg gacaccaaat ggcattatcg taattcccat aagaaattca 2700 aaattcaaaa gcggccatcc gtataatatt 2730 //