ID   AJ409319; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   AJ409319;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus genes for TGB2 protein, TGB3 protein, coat protein and
DE   nucleic-acid binding protein, isolate yn3: Yunnan, genomic RNA
XX
KW   coat protein; nucleic-acid binding protein; TGB2 protein; TGB3 protein.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 197f538719adf39d063fff4d9799de68.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium sativum"
FT                   /isolate="yn3: Yunnan"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan"
FT                   /db_xref="taxon:12458"
FT   CDS             1..339
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:Q8UZ84"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ84"
FT                   /protein_id="CAC84195.1"
FT                   /translation="MPLSPPPDHTRTLFAGAIGVCIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKKIIYNSPARNFPSSNLLSNFTSPLCLIALIIGLICLSEKFRPSTSTRVT
FT                   CSCNHSSL"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /db_xref="GOA:Q8UZ83"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ83"
FT                   /protein_id="CAC84196.1"
FT                   /translation="MQLQPLIALITGLLATLFLCHILEGFKSDKCTVIITGESVKFLGC
FT                   DFTREFIDFAREAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8UZ82"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ82"
FT                   /protein_id="CAC84197.1"
FT                   /translation="MTNEEEELSNVQKLPTRDPVTIPEHERSKAVNDVGVMEREGFEAV
FT                   LRRSENRFNKLKEKCMNELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   IAVGGRVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFREDRC"
FT   CDS             1419..1715
FT                   /product="nucleic-acid binding protein"
FT                   /db_xref="GOA:Q8UZ81"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ81"
FT                   /protein_id="CAC84198.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVINIIVNKIVCGRAGASHY
FT                   ARARRAERIGRCPRCFRCSPGFYFTKNCDTKTCSTGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1808 BP; 509 A; 402 C; 411 G; 486 T; 0 other;
     atgcctctaa gtccaccgcc tgatcataca agaacactct tcgctggcgc aattggcgtg        60
     tgcattgctc tttgcttgta cactctaact cgttctactt tgccccacgt cggggataat       120
     atacatagtt tgccgcacgg tggttgttac caagacggca caaagaagat aatctacaat       180
     agtcctgcta ggaactttcc gagtagcaac ttgctgtcga attttacttc gcccctgtgc       240
     ttaattgcct taatcatcgg gctaatctgt ctgagtgaga aattcagacc aagtacgagc       300
     actcgtgtta catgcagttg caaccactca tcgctctgat caccggtctc ttagcaacac       360
     tatttctctg tcatattctt gaaggtttca aatctgataa gtgcacagtt ataattaccg       420
     gagaatcagt taaattttta ggctgcgatt tcacaagaga gttcattgat tttgccagag       480
     aagcgaaacc ctttggttca ctttaggtat acagcgctag aaattgatat tatgactaac       540
     gaggaagaag aactcagtaa cgtgcagaaa ttgcccacac gcgatcctgt gactatcccg       600
     gaacatgaac gtagcaaagc agtaaatgat gtaggtgtca tggagcgcga gggtttcgaa       660
     gctgtattgc gcaggagcga aaacagattt aacaaactca aagaaaaatg catgaatgag       720
     ctgtcaagcg tgaatgtcac gaattgcggg tgggaatcag gacggcctaa agcgcaactg       780
     gcggacagtc tcaaagggga tgcttctaac atcttcactc gtccctccat ggacgctctc       840
     cttgttcgga attatgcgcc tgaaagtaac aacatggcaa ctgctgagga gttagccaaa       900
     atttcagcta aagttcaagc ccttggcgcc cctgaggagt gcttggctga ggtattctgg       960
     gacatatgca tgtattgcac caccgcaggt agttctccga atgtgaatcc caagggaacc      1020
     atcgctgttg gtggcagagt cgtaactaga gatatggtcg tggctgtaat caaagagtac      1080
     tccacattgc ggcaagtttg tcgctgctac gcacctgtcg tctggaatta catgttgtta      1140
     aatgaacagc cccctgctaa ttgggacgcg aagggcttca ctgagaacac taagtatgct      1200
     gcctttgaca cttttgatgc cgtgacgaat aaagccgcaa tccagcctct tgagggtcta      1260
     atcagagccc cgaccgacgc cgaaaggatc gcttttgcga cacacaaaaa attggctctc      1320
     actaaaaatt cacaaaactc ccgctacgcg aacacgtccg ctgaagttac tggaggattc      1380
     ttcgggtgtt ttccaaaaaa caatttccgt gaggatcgat gttgatcaaa cagaggactt      1440
     accgtagatt actgcgtgct atatttaaat tacatactaa taagaattgt gtggatgtta      1500
     taaatattat cgtgaataag attgtgtgcg gacgcgcggg ggcttcacat tacgctcgag      1560
     ctcgtagagc tgaacgcatt gggagatgcc ctcgctgttt ccggtgttca cctggttttt      1620
     acttcactaa aaactgtgac accaaaacct gttccacagg cattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc ttctacaaac cttggcttgt      1740
     tgcccataaa acttaaataa tgcataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//