ID   AJ409318; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   AJ409318;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus genes for TGB2 protein, TGB3 protein, coat protein and
DE   nucleic-acid binding protein, isolate yn2: Yunnan, genomic RNA
XX
KW   coat protein; nucleic-acid binding protein; TGB2 protein; TGB3 protein.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 71cd06851380123adade291f694047f9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium sativum"
FT                   /isolate="yn2: Yunnan"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan"
FT                   /db_xref="taxon:12458"
FT   CDS             1..339
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:Q8UZ88"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ88"
FT                   /protein_id="CAC84191.1"
FT                   /translation="MPLSPPPDHTRTLFAGAIGVCITLCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKKIIYNSPARNFPSSNLLSNFTSPLCLIALIIGLICLSEKFRPSTRTRVT
FT                   CSCNHSSL"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /db_xref="GOA:Q8UZ87"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ87"
FT                   /protein_id="CAC84192.1"
FT                   /translation="MQLQPFVALITGLLVTLLLCNTLERFKSDKCTVIITGESVKFLGC
FT                   DFTREFIEFAREAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8UZ86"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ86"
FT                   /protein_id="CAC84193.1"
FT                   /translation="MTNEEEEISNVQKLPTRDPVTIPDHERSKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMNELSSVNVTNCGWESGRPKAQLADNLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   IAVGGRVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFQGDRC"
FT   CDS             1419..1715
FT                   /product="nucleic-acid binding protein"
FT                   /db_xref="GOA:Q8UZ85"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ85"
FT                   /protein_id="CAC84194.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVIDIIVNKIVCGRAGASHY
FT                   AQARRAERIGRCPRCFRCSPGFYFTKNCDTKTCSTGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1808 BP; 507 A; 393 C; 411 G; 497 T; 0 other;
     atgcctctta gtcctccgcc tgatcacaca agaactctct ttgccggcgc aatcggcgtg        60
     tgcattactc tttgcttgta cactctaact cgttctactt tgccccacgt tggggataat       120
     atacatagtt tgccgcacgg tggttgttac caagacggta caaagaagat aatctacaac       180
     agtccagcta ggaactttcc gagtagcaac ttgctgtcga atttcacatc acccctgtgc       240
     ttgattgcct taatcatagg actaatttgt ttgagtgaga agttcagacc gagcacgcgc       300
     actcgcgtca catgcagttg caaccattcg tcgctctgat cactggtctt ttagtgacac       360
     tacttctttg taatactctt gaacgtttca aatctgataa gtgcacagtt ataattactg       420
     gagaatcagt taaatttttg ggttgcgatt ttacaagaga gttcattgag ttcgccagag       480
     aagcgaaacc ctttggttca ctttaggttt acagcgctag aaattgatat tatgactaac       540
     gaggaagaag aaatcagtaa cgtgcagaaa ttgcctactc gtgatccggt gactattccg       600
     gatcatgaac gtagtaaagc tgtaaatgat gtcggggtca tggaacgcga gggtttcgaa       660
     gccgtattgc gcagaagtga aagcagattt aacaaactca aagaaaaatg catgaatgag       720
     ctgtcaagcg tgaatgtcac gaactgcggg tgggaatcag gtcggcctaa agcgcaactg       780
     gcggacaatc tcaaaggaga tgcttctaac attttcactc gcccctccat ggacgctctc       840
     cttgttcgga attatgcgcc cgaaagtaac aacatggcaa ctgctgagga gttagcaaaa       900
     atttccgcta aagttcaagc ccttggcgcc cctgaggagt gtttggctga ggtgttctgg       960
     gatatatgca tgtattgcac caccgccggt agttcaccga atgtgaatcc caagggaacc      1020
     attgccgttg gtggtcgagt cgtgactaga gatatggtcg tagctgtgat caaagagtac      1080
     tctacattgc ggcaagtttg tcgctgctat gcacctgtcg tctggaatta catgttatta      1140
     aatgaacagc cccctgccaa ttgggatgca aagggcttca ctgagaacac taagtatgct      1200
     gcctttgaca ctttcgatgc cgtgacgaat aaagctgcaa tccaacctct tgagggtcta      1260
     attagagctc cgaccgacgc agaacggatc gcttttgcta cacacaaaaa attggctctc      1320
     actaaaaatt ctcaaaactc ccgctacgcg aacacgtctg ctgaagttac tggaggcttc      1380
     ttcgggtgct ttcccaaaaa caatttccaa ggggatcgat gttgatcaaa cagaggactt      1440
     accgtagact actacgtgct atatttaaat tacatactaa taagaattgt gtggatgtga      1500
     tagatattat cgtgaataag atagtgtgcg gacgcgcagg ggcttcacat tacgctcaag      1560
     ctcgtagagc tgaacgtata gggaggtgcc ctcgctgttt ccggtgttca cctggttttt      1620
     acttcactaa aaactgtgac accaaaactt gttccacagg cattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactataaac cttggctagt      1740
     tgcccataaa acttaaataa tgcataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//