ID   AJ409315; SV 1; linear; genomic RNA; STD; VRL; 1809 BP.
XX
AC   AJ409315;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus genes for TGB2 protein, TGB3 protein, coat protein and
DE   nucleic-acid binding protein, isolate js: Nanjing, genomic RNA
XX
KW   coat protein; nucleic-acid binding protein; TGB2 protein; TGB3 protein.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1809
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 8651a80b38f935f1a4b21a39da2276e9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1809
FT                   /organism="Garlic latent virus"
FT                   /host="Allium sativum"
FT                   /isolate="js: Nanjing"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:Q8UZA0"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZA0"
FT                   /protein_id="CAC84179.1"
FT                   /translation="MPLRPPPDHSKTYFACAIGVGIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIVYNSPARNFPSSNLPLNFASPVLLLGILIGLICLSEKLKPSSRARVT
FT                   CNCNHS"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /db_xref="GOA:Q8UZ99"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ99"
FT                   /protein_id="CAC84180.1"
FT                   /translation="MQLQPLIALIVGLSVTLFICFTLDRVRIEKCTVIITGESVKFLGC
FT                   EFTKDFIDFATQAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8UZ98"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ98"
FT                   /protein_id="CAC84181.1"
FT                   /translation="MANEEEELNRVRNLPTRDPGTVPDGERSKAVNDVGIMDREGFEAV
FT                   LRRSESRFNKLKEKCIAELSSINVTNCGWESGRPKAQLADNLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1419..1715
FT                   /product="nucleic-acid binding protein"
FT                   /db_xref="GOA:Q8UZ97"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ97"
FT                   /protein_id="CAC84182.1"
FT                   /translation="MLIKRRTYRRLLRAIFKLHTNKNCVDLIDIIVSKIVCESAGASYY
FT                   ARARRAKSIGRCPRCFRCSPGFVFTKNCDTKTCVPGISYNTKVKEFIVNGVTM"
XX
SQ   Sequence 1809 BP; 516 A; 393 C; 405 G; 495 T; 0 other;
     atgcctctta gacctccacc tgatcactcc aagacttatt tcgcctgcgc tataggagtt        60
     ggtatcgccc tttgcttgta cactttaacc cgttcaacgc taccacacgt aggggataat       120
     atacatagtc taccacacgg cggttgttat caagacggca ccaagagaat cgtttacaat       180
     agtccggcta ggaactttcc aagcagcaac ttgccgttga acttcgcttc ccctgtactt       240
     ttactaggaa ttcttatagg cctaatctgc ttaagcgaga aattaaagcc cagctcgcga       300
     gcccgtgtca catgcaattg caaccactca tagctctgat cgtcggtctt tctgtgacgc       360
     tgttcatttg ctttactctt gatagagtta gaattgagaa gtgcaccgtc attattactg       420
     gagaatcggt caaattcttg gggtgtgagt ttactaagga ttttatagat tttgctacac       480
     aagccaaacc ttttggttca ctttaggttt acagcgctct aaattgatat tatggcaaac       540
     gaagaagaag aactcaacag agttagaaac ttgcccacgc gcgacccggg aacagttccc       600
     gatggggaac gtagtaaggc cgttaatgac gttggcatca tggaccgcga aggctttgag       660
     gccgtcctcc gtaggagcga aagtagattc aacaaactca aagagaagtg catagctgaa       720
     ttatctagca taaatgtgac gaattgtggt tgggaatccg gacgccccaa agctcagctc       780
     gccgataatc ttaaagggga tgcttcaaac attttcaccc gtccttccat ggatgcgctt       840
     ttagtacgaa actacgcacc tgaaagcaat aatttggcta ctgccgagga attggcaaaa       900
     atatccgcca aagttcaggc tctaggtgca ccagaagagt gtctggccga agtgttctgg       960
     gatatttgca tgtattgcac tactgccggg agttcgccaa atgtgaatcc caaagggaca      1020
     atctctgtcg gtggtaaagt cgtaactagg gacatggtgg tcgccgtcat caaggaatac      1080
     tcgacgctac gtcaagtttg ccgttgctac gcgcccgttg tttggaatta catgttattg      1140
     aatgagcaac cacctgctaa ttgggacgca aaggggttca ctgaaaacac taaatatgcc      1200
     gcctttgata ccttcgacgc tgtgactaac aaagccgcaa tccaaccact tgagggtctg      1260
     ataagggccc caactgacgc tgaacgcatc gctttcgcta cacacaagaa gttagcactt      1320
     gctaagaatt cacaaaactc tcgatacgct aatacttctg ctgaggtcac aggagggttc      1380
     ttcggatgct ttcctaaaaa caatttcaga gagaatcgat gttgatcaag cgaagaactt      1440
     accgtagatt actgcgtgct atatttaaat tacatactaa taagaactgt gtggatttga      1500
     ttgatattat cgtgagtaaa atagtgtgtg agagtgccgg ggcatcatac tatgctcgag      1560
     ctcgtagagc taagagtata ggtaggtgcc ctcgttgttt caggtgctca ccaggttttg      1620
     ttttcactaa aaactgtgat accaaaactt gtgtccctgg tattagctat aatactaaag      1680
     tcaaggaatt tatagttaat ggtgtaacaa tgtgaaacct tactatagac cttgaatagt      1740
     tgcccacaaa gcctaaataa tgtataagtg ggaacgaaat aaaataattt gtttttaaaa      1800
     tattttcgc                                                              1809
//