ID   AJ409310; SV 1; linear; genomic RNA; STD; VRL; 1625 BP.
XX
AC   AJ409310;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Onion yellow dwarf virus partial gene for polyprotein, isolate js2:
DE   Nanjing, genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Onion yellow dwarf virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1625
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 25b2f4273bf1a21532b4168eedec48dd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1625
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum"
FT                   /isolate="js2: Nanjing"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu"
FT                   /db_xref="taxon:43130"
FT   CDS             <1..1410
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UZ23"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ23"
FT                   /protein_id="CAC84171.1"
FT                   /translation="GNNSGQPSTVVDNTIMVMLSVQYALRKCGIDLDKQSNVIKYFCNG
FT                   DDLLIAIHPDYETILDQFKQCFHELGLDYDFSNRSKSKEDVYFMSHRGLLRDGIYIPKL
FT                   DKERVVSILEWDRADKPEHRLEAICAAMIEAWGYPDLVHEIRKFYQWLLEQAPYNMIAQ
FT                   DGKAPYIAETALKKLFTDIDASEVELEKYYEMYLALEDQEQTIKEVRYQAGDTEDAAAQ
FT                   SSDARRITKQKDKDVDAGTTGKFTVPRIKALSDKMRFPKVGKNVVLNAEHLLAYKPEQI
FT                   ELYNTRATQRQFENWFMAVKKEYDVDDEQMKILLDGLMVWCIENGTSPNLSGNWTMMDG
FT                   DEQIEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGIQRNLTELSLA
FT                   RYAFDFYEMTSKTPKRAKEAHMQMKAAAVRGATNRLFGLDGNVNTTEEDTERHTAADVN
FT                   KNQHTLLGIKM"
FT   mat_peptide     <1..636
FT                   /product="NIb protein"
FT   mat_peptide     637..1407
FT                   /product="coat protein"
FT   3'UTR           1411..1625
XX
SQ   Sequence 1625 BP; 544 A; 282 C; 388 G; 411 T; 0 other;
     gggaacaata gcggacaacc atctacagtc gttgacaaca caataatggt aatgctgagt        60
     gtacaatatg ccctacggaa gtgtggtatt gatttagata aacagagtaa tgtcataaag       120
     tatttctgta atggtgatga tttgttgata gcgatacatc cggattacga gactatactc       180
     gatcaattta aacaatgctt ccatgagcta gggttagatt atgatttctc gaatagaagc       240
     aagtcgaaag aggacgttta cttcatgtca catagaggat tactcaggga tggaatttac       300
     attccaaagt tggataagga gcgtgttgtg tcaattcttg agtgggatcg agcagacaag       360
     cccgagcacc gattggaggc tatatgtgca gctatgattg aagcatgggg ttatcccgac       420
     ttggtgcacg aaataaggaa attttatcag tggttgctag aacaagctcc gtataatatg       480
     atagcgcaag atggtaaggc tccgtacata gcagagacag ctcttaagaa gctatttact       540
     gacattgatg cgagtgaggt tgaacttgaa aaatattatg agatgtatct agcactggaa       600
     gatcaagagc aaactattaa ggaagtccga taccaagctg gagatacaga agatgctgca       660
     gcacaatcaa gcgacgcaag gcgaatcacg aagcagaaag ataaggatgt tgatgctgga       720
     acaactggaa aattcacagt acctagaatc aaagcactct ccgataaaat gcgatttccc       780
     aaagtcggca agaatgtagt acttaatgct gagcatctat tagcgtataa accagaacaa       840
     atagagctat acaatacgag agcgacacaa cgccaatttg agaattggtt tatggcagtg       900
     aagaaggaat acgacgtgga cgatgaacaa atgaaaattt tactggatgg gctaatggtt       960
     tggtgcattg aaaatggtac atctccaaac ttgtcaggta attggactat gatggatggt      1020
     gatgaacaaa ttgagtatcc attagcacca gttttagata atgctaaacc aacgtttaga      1080
     cagataatgg cgcacttcag tgatgcagct gaagcataca ttgaataccg aaacgccacc      1140
     gagaaataca tgccccggta tggaattcag cgcaatttaa cagaattaag tttagcacgt      1200
     tacgcattcg acttttatga aatgacttcg aaaactccca agcgagcgaa agaagcacat      1260
     atgcaaatga aggcggcagc ggttaggggg gcaactaatc gcttgtttgg cctggatggt      1320
     aacgtaaaca ccacagaaga ggacacggaa agacacacgg cggcagatgt gaataagaat      1380
     cagcacacgt tgctgggcat caagatgtaa atctgcacca acgtatcttt agtcttatat      1440
     aaatacatct atataagaac gtatgtaata tgtaattctc ttcgtttcgt ttaacctgac      1500
     tttgagcagt aaaatgtggt gtaccactag ctgtggcaaa cgatacggtt aaatttctgt      1560
     gattaatgtt gagcttcagg agtgtggtct tccacgaggt gaatcttagc gtgaattaca      1620
     gagac                                                                  1625
//