ID   AJ409308; SV 1; linear; genomic RNA; STD; VRL; 2085 BP.
XX
AC   AJ409308;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Leek yellow stripe potyvirus partial ORF1 for polyprotein, isolate js:
DE   Nanjing, genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2085
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; b8da6508c7d3263069ca602f4ab10c45.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2085
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="js: Nanjing"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1491
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UZ32"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ32"
FT                   /protein_id="CAC84169.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFSMYYAMEMSDIKDIHDKCVFFVNGDD
FT                   LIIAVEPGSEIFLDSLQNLFQQLGLNYNFDSRTRDKEELCFMSHMGLLQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILEQAPYSELSTVG
FT                   KAPFISEAALRNLYTDHKATESELARYLELYDSDTTPEDTFEYQAGEELDAGTQASKNQ
FT                   KNNSDKSLEQRNPLASQISTQGRNDGSSGAELSMGKDRDVNVGTTGTFSVPRIKQISQK
FT                   GIAIPMDGGKSILNLDHLLQYKPSQLYISNTRATKAQFMAWKTRLQEEYGVTASEMSII
FT                   LNGLMVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAY
FT                   IEMRNAEQAYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSR
FT                   PKLFGLDGNVTTLDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..621
FT                   /product="NIb protein"
FT   mat_peptide     622..1488
FT                   /product="coat protein"
FT   3'UTR           1492..2085
XX
SQ   Sequence 2085 BP; 645 A; 405 C; 491 G; 544 T; 0 other;
     gggaacaaca gtgggcaacc atctactgtc gttgataact cattgatggt cgttttctct        60
     atgtattacg caatggaaat gagtgacata aaagatatcc atgacaagtg tgtgttcttt       120
     gtcaatggtg atgatctaat aatcgcggtc gaaccagggt ctgaaatctt tctggatagc       180
     ttacaaaatc tatttcaaca gcttggtttg aattacaact tcgatagccg aacacgcgat       240
     aaggaagaat tgtgtttcat gtcacatatg ggtcttctac aggatggcat ttatatacca       300
     aaactggata aggaacgtat agtctctata ttagagtggg atcgcgctca gcaacctgaa       360
     cataggttgg aagccatctg tgcagccatg atcgaagctt ggggttatcc agatttgttg       420
     gatcggattc ggaaatttta ttgttggatt cttgagcaag caccatatag tgaactaagc       480
     acagtaggca aggcaccttt catttctgaa gcagcattac gcaatctata cactgatcac       540
     aaggctacgg agtcagaatt ggcaaggtac cttgaactgt acgatagtga cacaacccca       600
     gaagatacat ttgagtacca agcaggagaa gagctagatg cagggacaca agctagcaaa       660
     aaccaaaaga ataattcgga caagtcatta gagcaacgga acccactagc gtcacaaatc       720
     agtacacaag ggaggaacga cggcagcagt ggtgcagaac tgagcatggg taaagataga       780
     gatgtgaatg ttggtaccac agggacattc agtgttccta ggatcaaaca aatttcacaa       840
     aaaggtatag caattccaat ggatggagga aagtcaatac taaatttgga ccatctttta       900
     caatataaac ctagtcagtt atacatttct aacacaaggg ccactaaggc gcaatttatg       960
     gcttggaaaa caagactaca ggaggaatat ggtgtcaccg caagcgagat gagcatcatt      1020
     ttaaacggcc tgatggtgtg gtgtattgaa aatggcactt cgccaaatat aaatggagtt      1080
     tggacaatga tggatggtga ggaacaggtc gaatttcctt tgcgacccgt agtagaacac      1140
     gcacaaccaa ccttacggca gataatggcg catttctcag cacttgcaga agcttacatt      1200
     gagatgagga atgctgagca ggcatacatg ccaaggtatg gattacaaag gaatcttaca      1260
     gatatgagtc tcgcacggta tgcatttgac ttttatgaag tcacatcaag aacaccagtt      1320
     agagcgcgcg aggctcatgc acagatgaaa gcagcggctt tgagaaactc aaggccaaaa      1380
     ctgtttggat tagacggtaa cgtcacaacg ttggatgagg acacggagag gcacacagca      1440
     catgacgtga atgcacggat gcaccatctt gatggtgcac atatgcagtg atgtttcggt      1500
     ttgtaaccgg ttatggactt ccatttaaaa agtctcgagt gccaaacttg tattttggct      1560
     agtttagtga agctacaatt cactcgttca aggcagtttc tactctaagg atgacttgag      1620
     aattgatagc tctcaatgcc ggccacagtg gtggctacca agatccaaca cttggtttga      1680
     agctgatcag ctgaagatct atcccgagta cggttttgta aagaaggtga attcaattgt      1740
     taaggatggt aagtctgaag cctttatggt gtatacgcag cctgaatttt gataccccac      1800
     ctttacccta caacggagtg ctactttaaa gactagctag gattgagacc gaattctcac      1860
     gtgctggcat ggcccgcggc taatcaccta atgattggtt gaccacctta cagtcaactt      1920
     ggaaacccgt agtatcctat ccttacctaa tatcgtaagt tttacttact ggtgtagtgt      1980
     ggtacaacca ccttataaac actttgaata ttaggatcga actgttcatt tgaagacact      2040
     aagagtggtt aaccatgtgt gtgttcttat gttgcagtaa gagac                      2085
//