ID   AJ409307; SV 1; linear; genomic RNA; STD; VRL; 2085 BP.
XX
AC   AJ409307;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Leek yellow stripe potyvirus partial ORF1 for polyprotein, isolate yn1,
DE   genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2085
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 8951a70973e87f7c5557b3ecd77f0f99.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2085
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="yn1"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1491
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UZ33"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ33"
FT                   /protein_id="CAC84168.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFSMYYAMEMSSIDDIHNKCVFFVNGDD
FT                   LIIAVEPGSEIFLDSLQNLFQQLGLNYNFDSRTRNKEELCFMSHMGILQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLNRIRKFYCWILEQAPYSELSTVG
FT                   KAPFISEAALRNLYTDYKATELELARYLELYNNDTILEDTFEFQAGEELDSGTQASKGQ
FT                   KNNADKSVEQRSPPFPQTSIQGRDDGGSSTDMSAGKDRDVNVGTTGTFSVPRIKQISQK
FT                   GISIPTDKGKSILNLDHLLQYKPSQLSISNTRATQTQFIAWKMRLQEEYGVTEGEMSIL
FT                   LNGLMVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAY
FT                   IEMRNAEQVYMPRYGLQRNLTDTSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSR
FT                   PRLFGLDGNVTTMDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..621
FT                   /product="NIb protein"
FT   mat_peptide     622..1488
FT                   /product="Coat protein"
FT   3'UTR           1492..2085
XX
SQ   Sequence 2085 BP; 654 A; 398 C; 482 G; 551 T; 0 other;
     ggaaacaata gtggtcagcc atcaaccgta gttgataatt cattaatggt tgttttctct        60
     atgtactatg caatggaaat gagcagcata gatgacattc ataacaaatg tgtattcttc       120
     gttaatggtg atgacttgat aattgcagtc gagccaggat ctgaaatctt tttagatagc       180
     ttgcaaaact tgttccaaca acttggtttg aattataact ttgatagtcg aacacgcaat       240
     aaagaagaac tgtgctttat gtcacatatg ggtattttac aggatggcat ttatatacca       300
     aaattggaca aggagcgtat agtttctata ttggaatggg atcgtgctca acaacctgaa       360
     cacaggttag aagccatatg tgcagccatg atcgaagcat ggggttatcc ggatctgttg       420
     aatcgaattc ggaagtttta ttgttggatt cttgagcagg caccatatag tgaacttagc       480
     acagtgggta aagcaccatt catttccgaa gcggccttac gcaatttata cactgattat       540
     aaggctacag aattggaatt agcgaggtat ctcgagctgt acaataatga cacaatcctg       600
     gaagacacat ttgagtttca agcgggtgaa gagctagact caggaacaca ggcgagcaag       660
     ggccagaaga acaacgcaga taagtccgta gagcagcgaa gcccaccatt tccacaaact       720
     agcatacagg ggagagacga tggtggtagt agtacagata tgagcgcggg caaagatagg       780
     gatgtgaacg tagggaccac agggacattt agtgtaccgc gaataaaaca aatctcgcaa       840
     aaaggtatat cgattccaac tgataaaggg aagtcgatac ttaacttaga ccatctccta       900
     caatataaac ccagccaatt atccatatcc aacacaaggg ctactcaaac acaatttata       960
     gcttggaaaa tgaggctaca ggaagagtat ggcgtcactg aaggcgaaat gagtattcta      1020
     ctaaatggct tgatggtgtg gtgcattgaa aatggaacct caccaaatat caacggagtt      1080
     tggacaatga tggatggtga agaacaggtc gaatttcctt tgcgaccagt tgttgaacac      1140
     gcacagccaa ccttacggca aataatggca cacttctcag cgctagcgga agcttatatt      1200
     gaaatgagaa atgcagaaca agtttacatg ccaaggtatg gtttacaaag gaatctcaca      1260
     gacacgagtc tcgcacggta cgcatttgac ttttatgaag tcacatcaag aacaccagtt      1320
     agagcgcgcg aggctcacgc acaaatgaaa gcagcagctt tgaggaattc aaggccaagg      1380
     ctgtttgggc tggacggcaa cgtcacaacg atggatgagg acacggagag gcacacggca      1440
     catgacgtga acgcacggat gcaccatctt gatggtgctc atatgcagtg atgtttcggt      1500
     tgacaaccgg ttatggactt ccatttaaaa agtctcgagt gccaaacttg tattttggct      1560
     agtctagtga aactatgatt cactcgttca aggcagtttc tactttaagg atgacttgag      1620
     aattaatagc tctcaatgcc ggccacattg gtggttacca agatccaaca cttggtttga      1680
     agctgatcat ctgaagatct atcctgagta cggttaatta aagaaggtga atccaattgt      1740
     taaggatagt aagtctgaag cctttatggt gtataagcag cctgaatttt ggtaccccac      1800
     ctttacccta caacggagtg ctactttaaa gactagctag gattgagacc gaattctcac      1860
     atactggcat ggccagtggt taatcaccta atgattagtt gaccacttta tagtcaattt      1920
     ggaaacccgt agtatcctat ccttacctaa tatcgtaagt tttatttact ggtgtagcgt      1980
     ggtttaacca ccttataaac actttgaata ttaggatcga gctgttcatt tgaagacact      2040
     aagagtggtt aaccatgtgt gtgttcttat gttgcagtaa gagac                      2085
//