ID   AJ409306; SV 1; linear; genomic RNA; STD; VRL; 2082 BP.
XX
AC   AJ409306;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Leek yellow stripe potyvirus partial ORF1 for polyprotein, isolate yn2,
DE   genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2082
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; e5b6860d87c8611b5accab91174132e4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2082
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="yn2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1488
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UZ34"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ34"
FT                   /protein_id="CAC84167.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFAMYYAMEMSNIEDIHSKCVFFVNGDD
FT                   LLIAVEPGSELFLDSLQNLFQQLGLNYNFDSRTRNKEELCFMSHMGILQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWVLEQAPYSELSAVG
FT                   KAPFISEMALRNLYTDYKATESELARYLDLYANDTITEDIFEYQAGEELDAGTQANKSS
FT                   RGYADKSIEQRNPTPTQASTSGRKDGDSSDLSSSKDRDVNVGTTGTFSVPRIKQITQKG
FT                   LLIPMDGGKSVLNLDHLLQYKPSQLCISNTRATRAQFNTWRSKLQDEYGVSESEMSIIL
FT                   NGLVVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMTHFSALAEAYI
FT                   EMRNSEQAYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRP
FT                   RLFGLDGNVTTMDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..621
FT                   /product="NIb protein"
FT   mat_peptide     622..1485
FT                   /product="coat protein"
FT   3'UTR           1489..2082
XX
SQ   Sequence 2082 BP; 645 A; 403 C; 488 G; 546 T; 0 other;
     ggaaataaca gcggacagcc atccaccgtg gtagataact cacttatggt cgtgtttgcc        60
     atgtactacg ctatggaaat gagcaatatc gaggacattc acagtaagtg tgttttcttt       120
     gtgaatggcg atgatctact aattgcagtt gaaccaggct ctgagctctt ccttgatagt       180
     ttgcaaaact tatttcagca actcggtcta aattataatt ttgatagtcg aacgcgcaat       240
     aaagaggagt tgtgcttcat gtcacacatg gggattctac aagatggtat ctacatacca       300
     aagctagata aagagcggat agtgtcaata ttagaatggg atcgagctca acaacccgag       360
     cacaggttgg aagccatctg cgcagctatg attgaagcgt ggggttaccc agatcttcta       420
     gaccgaattc gaaaattcta ttgttgggtt cttgaacaag cgccgtatag tgagttaagt       480
     gccgttggaa aggcaccatt catctctgag atggccttgc gtaacttgta tactgactat       540
     aaggctacag agagtgaatt agcaaggtac cttgatctgt atgcgaatga tacaattaca       600
     gaagacattt ttgagtacca ggcaggtgaa gaactagatg caggtacaca agctaacaag       660
     agctcaaggg gttacgcaga taagtctata gagcaacgaa atccaacacc aacccaagct       720
     agcacaagtg ggaggaaaga cggtgatagt tcagatttaa gctcaagtaa agatagagat       780
     gtaaatgtag gcaccacagg gactttcagt gtgccaagaa taaaacaaat cacacaaaaa       840
     ggtttattaa ttccaatgga tggaggtaaa tcagtgctta atctggatca ccttctacaa       900
     tacaagccta gtcaactatg tatatcaaac actagagcca ctagagcaca attcaatact       960
     tggagatcta aactacagga tgaatatggg gtttcagaaa gtgaaatgag cattattttg      1020
     aacggtttgg tggtgtggtg tattgaaaat ggcacatcac caaacataaa tggagtctgg      1080
     acaatgatgg atggtgagga gcaagttgag ttccctttac ggccagtcgt cgaacacgca      1140
     cagccaactc tacgacaaat aatgacacat ttttcagcgc ttgcagaagc ctatattgag      1200
     atgagaaatt cggaacaggc atacatgcca agatacggat tgcagagaaa tctaacagat      1260
     atgagtctcg cacggtatgc atttgacttc tatgaagtta catcaagaac accagttaga      1320
     gcgcgcgagg ctcacgcaca gatgaaagca gcagccttgc ggaattcaag gccaaggctg      1380
     ttcggactag acggtaacgt cacaactatg gatgaggaca cggagaggca cacagcacat      1440
     gacgtgaatg cacggatgca ccatctcgat ggtgcgcata tgcagtgatg tttcggttta      1500
     taaccggtta tggacttcca tttaaaaagt ctcgagtgcc agacttgtat tttggctagt      1560
     ctagtgaaac tataattcac tcgttcaagg cagtttctac tttaaggatg acttgagaat      1620
     taatagctct caatgccggc cacgttggtg gttaccaaga tccaacactt ggtttgaagt      1680
     tgatcgtctg aagatctatc ccgagtacgg ttaattaaag aaggtgaatt cgattgttaa      1740
     ggatggtaag tctgaagcct ttgtggtgta taagcagcct gaatttcgat accccacctt      1800
     taccctacaa cggagtgcta ctttagagac tagctaggat tgagaccgaa ttctcacgtg      1860
     ctggcatggc cagcggctga tcacctaatg attagttgac cactttacag tcaatatgga      1920
     aacccgtagt atcctatcct tacctaatat cgtaagtttt atttactggt gtagcgtggt      1980
     acaaccacct tataaacact ttgaatatta ggatcgagct gttcatctga agacactaag      2040
     agtggttaac catgtgtgtg ttcttatgtt gcagtaagag ac                         2082
//