ID   AJ409305; SV 1; linear; genomic RNA; STD; VRL; 2081 BP.
XX
AC   AJ409305;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Leek yellow stripe potyvirus partial ORF1 for polyprotein, isolate sd:
DE   Jinxiang , genomic RNA
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2081
RA   Adams M.J.;
RT   ;
RL   Submitted (20-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 7c0862cd351c3a35d830d834742e4e22.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2081
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="sd: Jinxiang"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Shandong"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1488
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q8UZ35"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ35"
FT                   /protein_id="CAC84166.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFSMYYAMEMSNIDDIHNKCVFFVNGDD
FT                   LIIAVEPGSEIFLDSLQNLFHQLGLNYSFDSRTRNKEELCFMSHMGVLQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILDQAPYSELSTIG
FT                   KAPFISEAALRNLYTDCKATESELAKYLELYDGDVPPDETFGYQAGEEFDAGAQANKNQ
FT                   KSGADKAIEQRNPSVSQASAHGKSDGSSSELSMGRDKDVNVGTTGTFSVPRIKQISQKG
FT                   IAIPMDGNKSILNLDHLLQYKPSQLCISNTRATRTQFTAWRSRLQDEYGVTASEMSIIL
FT                   NGLMVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAYI
FT                   EMRNAEQAYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRP
FT                   RLFGLDGNVTTMDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..621
FT                   /product="NIb protein"
FT   mat_peptide     622..1485
FT                   /product="Coat protein"
FT   3'UTR           1489..2081
XX
SQ   Sequence 2081 BP; 647 A; 390 C; 488 G; 556 T; 0 other;
     gggaacaaca gtggacagcc atctactgta gttgataatt cattaatggt tgtcttttca        60
     atgtattacg ccatggaaat gagcaatata gatgacatcc ataacaaatg tgtattcttt       120
     gttaatggcg atgatttgat tattgctgta gagccagggt ctgaaatatt tctagatagt       180
     ttacagaatt tatttcacca acttggttta aattacagtt tcgatagtcg aacgcgcaat       240
     aaagaagaat tatgcttcat gtcacacatg ggtgttctac aggatggcat ttatatacca       300
     aaattggata aagagcgtat agtgtcaata ctggaatggg accgagctca gcaacctgaa       360
     cacaggttag aagccatctg cgcagctatg atcgaggctt ggggttatcc ggatctcttg       420
     gatcggattc gaaaatttta ttgttggatt cttgatcagg caccatacag tgaactgagc       480
     acaataggta aagcaccgtt tatttctgaa gcagccttac gcaatctata cactgattgc       540
     aaggccacag agtctgaatt ggcaaaatat cttgaattat acgatggtga tgtacctcca       600
     gatgaaacat ttgggtatca agcaggtgag gaattcgatg cgggagcaca agcaaacaag       660
     aatcagaaga gtggtgcaga caaggcaata gagcaacgga atccatctgt ttcacaagct       720
     agcgcacacg gaaagagtga tggaagcagt tcagaactga gcatgggtag agataaagat       780
     gtgaatgttg gtaccacagg aacatttagt gtaccacgga taaaacaaat ttcacagaaa       840
     ggcatagcaa ttccgatgga tggaaataaa tctatactca atttagacca cctcctacaa       900
     tataaaccta gtcagctatg catatcaaac acaagggcca ctaggacaca attcacggct       960
     tggagatcaa ggctgcagga tgaatatggt gtcactgcga gcgaaatgag tattatttta      1020
     aatggcttaa tggtgtggtg catagagaat ggcacttcac caaacataaa tggtgtttgg      1080
     acaatgatgg atggagagga acaggtcgaa tttcctttac gacccgttgt ggagcacgca      1140
     cagccaactt tgcggcagat aatggcgcat ttctcggcac ttgcagaagc ttacattgag      1200
     atgagaaatg cagagcaagc atatatgcca agatatggac tacaaaggaa tcttacagac      1260
     atgagtctcg cacggtacgc atttgacttt tatgaagtca catcaagaac accagttaga      1320
     gcgcgcgagg ctcacgcaca aatgaaagca gcagccttga ggaattcaag gccaaggttg      1380
     tttggtttag acggcaacgt cacaactatg gatgaggaca cggagaggca cacagcacat      1440
     gacgtgaacg cacggatgca ccatctcgat ggtgctcata tgcagtgatg tttcggttag      1500
     caatcggtta tagacttcca tctaaaaagt ctcgagcgcc aaacttgtat tttggctagt      1560
     gtagtgaaac tatgattcac tcgttcaagg cagtttctac tttaaggatg acttgagaat      1620
     taatagctct caatgccggc cacgttggtg gctaccaaga ttcaacactt ggtttgaagc      1680
     tgatcatctg aagatctatc ctggttacgg ttaagtaaag aaggtgaatt caattgttaa      1740
     ggatagtaag tctgaagcct ttatggtgta taagcagcct gaattttgat accacacttt      1800
     taccctacaa cggagtgcta ctttaaagac tagctaggat tgagaccgaa ttctcacatg      1860
     ctggcaaggc cagcggttga tcacctaatg atcagttgac cactttatag tcaaatggaa      1920
     acccgtagta tcctatcctt acctaatatc gtaagtttta tttactggtg tagtgtggtt      1980
     taaccacctt ataaacactt tgaatattag gatcgagctg ttcatctgaa ggcactgaga      2040
     gtggttgacc atgtgtgcgt tcttatgttg cagtaagaga c                          2081
//