ID AJ409146; SV 1; linear; genomic RNA; STD; VRL; 3617 BP. XX AC AJ409146; XX DT 14-DEC-2001 (Rel. 70, Created) DT 14-DEC-2001 (Rel. 70, Last updated, Version 1) XX DE Rice black streaked dwarf virus gene for P4 protein (ORF4), genomic RNA XX KW ORF4. XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3617 RA Adams M.J.; RT ; RL Submitted (08-MAR-2001) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s007050170006. RX PUBMED; 11811683. RA Zhang H., Chen J., Adams M.J.; RT "Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf RT virus from China provides the complete genome"; RL Arch. Virol. 146(12):2331-2339(2001). XX DR MD5; 35c3e1e856fab5a936caff03944cef75. DR EuropePMC; PMC3610162; 23331990. XX FH Key Location/Qualifiers FH FT source 1..3617 FT /organism="Rice black streaked dwarf virus" FT /chromosome="S4" FT /host="Oryza sativa" FT /mol_type="genomic RNA" FT /country="China:Zhejiang" FT /db_xref="taxon:10990" FT 5'UTR 1..33 FT CDS 34..3543 FT /product="P4 protein" FT /function="possible outer shell protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:Q8UZ05" FT /protein_id="CAC84074.1" FT /translation="MDPGQVLKYLLSQNYETKIQQLEQWQKQMEAAGYTSEYLNQSSDV FT LKVKSKIEESKRRLFFISANYWQGSLFTKTVAPNNLFLGFSECSGVNKTIFDAKNCDFG FT RFQFSFNCIPKYWILSGVFDELICYDKSKTKATISKLKNKISIRINDFMYIVPIINSFS FT FLSGNSDVIIDENCEFDILLRISQSFNEIMIDVYNFSFDDSNLNIEFRPTSIKFEGDAN FT YFSVSSNLIFNSIDGYLNRDNLNMRKYFRYAISMNNLNMINDSLNKWESKQLAKKKNLV FT SSLHRLVLNAMISISSLEKDVARVKSLKMELSYQRNISIHFPNHRIFLNKYPHDLFSPS FT LKTQFVGWNFTYGERDRFISPIVCDVETKLKTNSSIISNAFTSYFQCNSFGNPDNMFLL FT NVTDKNGNTKKVICEAIYSLKYKDFKYVDLKSINKKDNFQKQVYFFGLSEIELYDEHPK FT LQALSMVSENEGDLYHLFYSNCSPVLSFKIISESIEYLGVVSPKFTSEFEYNGKTLKLS FT GNLTLSEDFDGVQMKKCLTSEEFVLIEDVKCLFTSFICEGKRSSSKTKFNDKTWPGIRS FT RFYDNDAYLSAIQAHCHSLKLNTPFRSYVNYSDILYSANDNFHYVEANGCFTERKNYLY FT WDVPISNFEMMFDESPCVKLSNQSILTFFVNYRHLYEVVEGKNHPCLLSCKHHVEDYSI FT TQIDSPPILFLPFNRPVDIIYLEQSSGDEVLNEMKIISFEVKEFTAYVLPENLNTTMNI FT VGKLLNYESELELVYQTNNVISDMMNNFDKRLSDLEKFCDFLDKSYIKKAGSSTSLYHL FT LGDIFTFVGEICVLQFPILGFCFILTGIMVDALGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFTYLEELGFGRRRASSNSYISEMASSVGRRRSYSSYHHYESISDLSPSLSIRDRI FT MNQIRSHNPSVFDLHHNSGIILELKQKQKENYSLLNSSYSRMKRSISNVINDEVINYKL FT SCDNPSSCEVYELCIKTFDYYPILLDDNSFFIIKIQFKIKITSNPVKMKIEDIERSYFH FT TSDASRFRVFDAAKFDVTKHLNKSLLSFTFNEISNYLCVISLLSKTSSIDNMLIENHDK FT LYDTLYISNHKSYMSSDPIHLRQVDFTIFKTMHTYSFSDHAPDDSYFKMISSIVKHPEI FT LRF" FT 3'UTR 3544..3617 XX SQ Sequence 3617 BP; 1207 A; 520 C; 594 G; 1296 T; 0 other; aagttttttt ccatgtcttt aaattgaaca gggatggatc caggacaagt cctcaaatac 60 cttttgtctc agaattatga aaccaaaata caacaactag aacaatggca aaaacagatg 120 gaagcagcag gctacacgag cgaatactta aaccaatctt cagacgtgct taaagttaaa 180 agtaaaattg aagaatcaaa aagacggtta ttttttatca gtgctaatta ctggcaagga 240 agtctattta ctaaaacagt tgctccaaac aatttgtttc ttggatttag tgaatgctca 300 ggcgttaaca agactatttt tgatgctaaa aattgtgact tcggacggtt ccagtttagt 360 tttaattgta ttcctaaata ttggatattg tcaggtgttt ttgatgaatt aatttgctat 420 gataaaagta aaacaaaagc aacaattagc aagctaaaaa ataaaatttc aattcgtatt 480 aatgatttta tgtatattgt tccaatcata aacagtttct cttttttatc aggcaattca 540 gatgtcataa ttgatgaaaa ttgtgaattt gacattttgt taaggatttc tcagtccttt 600 aatgaaataa tgattgatgt ttataacttt agttttgacg attctaatct taatattgag 660 tttagaccga cctctatcaa atttgaaggt gatgctaatt acttttctgt ttcctccaat 720 ttaatattta atagtattga cggttacttg aatcgagata atttaaatat gagaaaatat 780 tttcgttatg ctataagtat gaataattta aatatgatca atgactccct aaataaatgg 840 gaatcgaaac aacttgcaaa aaagaaaaat ttagtaagca gcttacatcg attggtttta 900 aatgctatga taagtatttc ttctctggaa aaagatgtag caagagtcaa atctttaaaa 960 atggagttaa gttatcaaag aaacatttca attcatttcc caaatcatag aatctttttg 1020 aataagtacc ctcatgattt gttttcccca tctttgaaaa cacaatttgt cggttggaat 1080 tttacttatg gcgaaagaga tagattcatt tctcctattg tttgtgatgt agagacaaaa 1140 ttaaaaacta attcatctat cattagtaac gcttttactt cttattttca atgtaatagt 1200 tttgggaacc cggataatat gtttttgctt aacgtaacag acaaaaatgg taacactaaa 1260 aaagtaatct gtgaagccat ttattcccta aagtacaaag attttaagta tgttgatttg 1320 aaatcgataa ataagaaaga taattttcag aagcaagtgt atttcttcgg tttaagtgaa 1380 attgagttat atgatgaaca tccaaaactt caagcattat ctatggttag tgagaatgaa 1440 ggtgatcttt atcatttgtt ttatagtaat tgttctccag tgctttcttt taaaattatt 1500 tctgagagta tagaatattt gggtgtcgtg tctcctaaat ttacaagtga attcgaatat 1560 aatggtaaga ctctaaagct ttctggcaac ttaactttaa gtgaagattt tgatggtgtt 1620 caaatgaaga aatgtttaac atcagaagag tttgttttaa ttgaagacgt taaatgttta 1680 ttcacatctt ttatttgcga aggcaaacgc tcgtcatcta agactaaatt taacgacaaa 1740 acttggcccg gtattagaag tagattttac gataatgatg cttatttaag tgctattcaa 1800 gcacattgtc attctcttaa attaaatact ccttttcgat cttatgtcaa ttatagcgac 1860 attttgtatt ctgctaatga taattttcat tatgttgaag cgaatggctg ttttactgaa 1920 agaaaaaatt atctttattg ggatgttcca atttctaatt ttgaaatgat gtttgatgag 1980 tcaccttgtg taaaattaag taatcaaagt atcttaacct ttttcgttaa ttatcgtcat 2040 ctctatgaag tagttgaagg taaaaatcat ccttgtctcc tttcttgtaa gcatcatgtt 2100 gaagattatt ctataaccca gattgattcc cctcctattc tatttttgcc ttttaacaga 2160 cctgtagata taatttactt agaacagtcc tcaggcgatg aagttctcaa tgaaatgaaa 2220 attatatcat ttgaggtcaa agagtttact gcatatgtgc tgcctgaaaa tctaaacact 2280 acaatgaaca ttgtgggcaa gttattaaac tatgagtctg aattggagct agtttaccaa 2340 acgaataatg tcatttctga catgatgaat aatttcgaca agagattatc tgatttggag 2400 aagttttgtg atttcttgga taaaagttac atcaaaaaag ccggaagctc gacgtcactt 2460 taccatttgc ttggcgacat ttttactttt gtcggagaaa tttgcgtttt gcaatttcca 2520 atcttaggat tttgttttat tcttacaggg atcatggttg atgcattagg aaaaattact 2580 caggaagata ttttcgatgg tatcagtgaa atagcgtttg gtggtttatt attgtgttta 2640 ggaaagcgta aaccaaagtt tacttattta gaagaattgg gatttggtcg tcgtagagcc 2700 tcttctaatt catacatcag tgagatggca tcttcagttg gcagaagaag aagttattcc 2760 agttatcatc actatgaaag catcagtgat ttaagcccat cattgtctat tagagataga 2820 atcatgaatc aaatacgttc acacaaccct agtgtgtttg atttgcatca taattcaggt 2880 ataattttag agttgaagca aaagcaaaaa gagaattatt cacttctcaa ttctagttat 2940 tctagaatga agcgatctat cagtaatgtt ataaatgatg aagtaataaa ctataaactt 3000 tcttgtgaca accccagttc atgcgaagtt tatgagttgt gtatcaaaac ttttgattat 3060 tatccaatcc ttttggatga caattctttt tttataatta aaatacaatt taagatcaaa 3120 atcacatcta atccagttaa aatgaaaatt gaagatattg agagaagtta ttttcatact 3180 tcagatgcct caagatttcg agtctttgat gctgctaaat ttgacgtcac caaacattta 3240 aataagtctt tattgtcttt tacttttaat gagatatcca attatttatg tgtcatcagt 3300 cttctgtcaa aaactagttc aatagacaat atgttaatcg agaatcatga taagttgtat 3360 gatactttgt acatttcaaa tcataaatct tacatgtcca gtgaccctat tcatttacgt 3420 caagtagatt tcactatatt taaaacaatg catacttact ctttttcaga tcatgctcct 3480 gatgacagtt atttcaagat gatctcaagc attgttaaac accctgaaat tctgagattt 3540 taatgtactt tgggtcgacg cgactggtga aatctacgaa ctgttggaat ttgacataca 3600 tgggaacagc tatcgtc 3617 //