ID   AJ390307; SV 1; linear; genomic RNA; STD; VRL; 1204 BP.
XX
AC   AJ390307;
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
XX
DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate O-Tom
XX
KW   coat protein; cp gene; NIb gene; NIb replicase; polyprotein.
XX
OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1204
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the INSDC.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   MD5; 6449702bebec75745989abc3d511d1ac.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1204
FT                   /organism="Potato virus Y"
FT                   /strain="C"
FT                   /isolate="O-Tom"
FT                   /mol_type="genomic RNA"
FT                   /country="Portugal"
FT                   /db_xref="taxon:12216"
FT   CDS             <1..875
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9EAB6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q9EAB6"
FT                   /protein_id="CAC05619.1"
FT                   /translation="AFTEMMVALDDEFECDSYEVHHQANETIDAGENSKKDAKPEQGSI
FT                   QRNPNKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKSKGTAVLNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVRVAYDIGENEMPTVMNGLMVWCIENGTSPNVNGVWVMMDGNEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDGSLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQSRLFGLDGGVSTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1..71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72..875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876..>1204
XX
SQ   Sequence 1204 BP; 373 A; 214 C; 295 G; 321 T; 1 other;
     aggctttcac tgaaatgatg gttgcattgg atgatgagtt tgaatgtgat tcttatgaag        60
     tacatcacca ggcaaatgaa acaattgatg ctggagaaaa cagcaagaaa gatgcgaaac       120
     cagaacaagg tagtatccag cggaacccca acaaaggaaa ggataaggac gtgaatgccg       180
     gtacatctgg aactcatact gtaccaagaa taaaggctat cacgtcaaag atgagaatgc       240
     ctaaaagcaa aggaacggcc gtgctcaact tagaacactt gctcgagtat gctccacaac       300
     aaatagacat ctcaaatact cgggcaactc aatcacagtt tgatacgtgg tatgaagcag       360
     tgcgggtggc atacgacata ggggaaaatg aaatgccaac tgtgatgaac gggcttatgg       420
     tttggtgcat tgaaaatgga acctcgccta atgtcaacgg agtttgggtt atgatggatg       480
     gaaatgaaca agttgaatat ccgttgaaac caatcgttga gaatgcaaaa ccgaccctta       540
     ggcaaatcat ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa       600
     aggaaccata tatgccacga tatggtttaa ttcgaaatct gcgggatgga agtctagcgc       660
     gttatgcctt tgacttttat gaagtcacat cacgaacacc agtgagggct agggaagcgc       720
     acattcaaat gaaggccgca gcattaaaat cagctcaatc tcgacttttc gggttggacg       780
     gtggcgttag tacacaagag gagaacacag agaggcacac caccgaggat gtttctccaa       840
     gtatgcatac tttacttgga gtcaagaaca tgtgattgtg atgtctctcc ggacgatata       900
     taagtattta catatgcagt aagtattttg gcctttcctg tactactttt attgtaacta       960
     gtaatcagtt tggatattag taatagatag aggtggcagg gtgatttcgt cattgcggtg      1020
     actctatctg ttatttctgc attattaagt ttcaaataag agtgccgggt tgtcgttgtt      1080
     gtaggtaaac catcgattag gtgaygttgc gattttgtcg ttgcagtgac tatgtctggt      1140
     tctatctact tgggtggtgt tgtgatttcg tcataacagt gactgtaaac ttcaatcagg      1200
     agac                                                                   1204
//