ID   AJ390302; SV 1; linear; genomic RNA; STD; VRL; 1204 BP.
XX
AC   AJ390302;
XX
DT   29-AUG-2000 (Rel. 64, Created)
DT   29-AUG-2000 (Rel. 64, Last updated, Version 1)
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DE   Potato virus Y partial genomic RNA for polyprotein gene, isolate PVY-C-CM
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KW   coat protein; cp gene; NIb gene; NIb replicase; polyprotein.
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OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1204
RA   Boonham N.;
RT   ;
RL   Submitted (01-NOV-1999) to the INSDC.
RL   Boonham N., Plant Health, CSL, Sand Hutton, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Boonham N., Walsh K., Hims M., North J., Barker I.;
RT   "Sequence comparisons within the PVY coat protein highlight a distinct
RT   group of recombinant isolates (PVYNTN) associated with potato tuber
RT   necrotic ringspot disease (PTNRD).";
RL   Unpublished.
XX
DR   MD5; 4e042115637c1cc95c9b24724a019917.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1204
FT                   /organism="Potato virus Y"
FT                   /strain="C"
FT                   /isolate="PVY-C-CM"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:12216"
FT   CDS             <1..875
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9EAC1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q9EAC1"
FT                   /protein_id="CAC05614.1"
FT                   /translation="AFTEMMVALDDEFEFDSYEVHHQVNETIDAGGSSKKDARPEQGSI
FT                   QSNPNKGKDKDVNVGTSGTHTVPRIKAITSKMRMPQSKGATVLNLEHLLEYAPQQIDIS
FT                   NTRATQSQFDTWYEAVRVAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGNEQ
FT                   VEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRNLRDGGLARYA
FT                   FDFYEVTSRTPVRAREAHIQMKAAALKSAQPRLFGLDGGISTQEENTERHTTEDVSPSM
FT                   HTLLGVKNM"
FT   mat_peptide     <1..71
FT                   /gene="NIb"
FT                   /product="NIb replicase"
FT   mat_peptide     72..875
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           876..>1204
XX
SQ   Sequence 1204 BP; 369 A; 211 C; 298 G; 326 T; 0 other;
     tagccttcac tgaaatgatg gttgcactgg atgacgagtt tgagtttgat tcatatgaag        60
     tgcatcatca agtaaatgaa acaatcgatg caggagggag cagcaagaaa gatgcgagac       120
     cagaacaggg tagcatccag tcaaatccta acaagggaaa ggataaggac gtaaatgttg       180
     gtacatctgg aacacatact gtaccaagaa taaaggcgat tacgtccaaa atgagaatgc       240
     ctcaaagcaa gggggcgacc gtgctaaact tggaacactt gctcgagtat gctccacagc       300
     aaattgatat ctcaaatact cgggcaactc aatcacagtt tgatacatgg tatgaagcag       360
     tacgggtggc gtacgacata ggggaaactg aaatgccaac tgtgatgaat gggcttatgg       420
     tttggtgcat tgagaatgga acctcgccaa atatcaacgg agtttgggtt atgatggatg       480
     gaaatgaaca agttgaatac ccgttgaaac caatcgttga gaatgcaaaa ccaaccctta       540
     ggcaaatcat ggcacatttc tcagatgttg cagaagcgta tatagaaatg cgcaacaaaa       600
     aggaaccata tatgccacga tatggtttaa ttcgaaattt gcgggatgga ggtttggcgc       660
     gctatgcctt tgacttttat gaagtcacat cacgaacacc agtgagggct agggaagcgc       720
     acatacaaat gaaagccgca gcattgaaat cagctcaacc tcgacttttc gggttggatg       780
     gtggcatcag tacacaagag gagaacacag agaggcacac caccgaggat gtttctccaa       840
     gtatgcatac tctacttgga gtcaagaaca tgtgattgta atgtctctcc ggacgatata       900
     taagtattta catatgcagt aagtattttg gcttttcctg tactactttt attgtaacta       960
     ataatcagtt tgaatattac taatagatag aggtggcagg gtgatttcgt cattgtggtg      1020
     actctatctg ttatttctgc attattaagt tttgtataaa agtgccgggt tgtcgtcgtt      1080
     gtagatggtc tatcgattag gtggtgttat gattttgtca tggcagtgac tatgtctggg      1140
     cttatctact tgggtgatgt tgtgatttcg tcataacagt gactgtagac ttcaatcagg      1200
     agac                                                                   1204
//