ID   AJ345002; SV 1; linear; genomic RNA; STD; VRL; 1746 BP.
XX
AC   AJ345002;
XX
DT   09-AUG-2001 (Rel. 68, Created)
DT   25-AUG-2011 (Rel. 109, Last updated, Version 4)
XX
DE   Cardamom mosaic virus partial nib gene for nuclear inclusion body b,
DE   genomic RNA
XX
KW   NIb gene; nuclear inclusion body b.
XX
OS   Cardamom mosaic virus
OC   Viruses; Riboviria; Potyviridae; Macluravirus.
XX
RN   [1]
RP   1-1746
RA   Usha R.;
RT   ;
RL   Submitted (08-AUG-2001) to the INSDC.
RL   Usha R., Plant Biotechnology, Madurai Kamaraj University, Palkalai Nagar,
RL   Madurai, Tamil Nadu 625021, INDIA.
XX
RN   [4]
RX   DOI; 10.1023/A:1011191614839.
RX   PUBMED; 11556406.
RA   Jacob T., Usha R.;
RT   "3'-Terminal sequence analysis of the RNA genome of the Indian isolate of
RT   cardamom mosaic virus: a new member of genus Macluravirus of potyviridae";
RL   Virus Genes 23(1):81-88(2001).
XX
RN   [5]
RX   PUBMED; 21086722.
RA   Jebasingh T., Jacob T., Shah M., Das D., Krishnaswamy S., Usha R.;
RT   "Optimized expression, solubilization and purification of nuclear inclusion
RT   protein b of cardamom mosaic virus";
RL   Indian J. Biochem. Biophys. 45(2):98-105(2008).
XX
DR   MD5; 91d936eb665d874306579e56c9040761.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1746
FT                   /organism="Cardamom mosaic virus"
FT                   /host="cardamom"
FT                   /isolate="Yeslur"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Karnataka"
FT                   /tissue_type="infected cardamom leaves"
FT                   /db_xref="taxon:104637"
FT   CDS             <1..>1746
FT                   /codon_start=1
FT                   /gene="nib"
FT                   /product="nuclear inclusion body b"
FT                   /function="RNA dependent RNA polymerase"
FT                   /note="NIb is a protein cleaved from the polyprotein. The
FT                   sequence given here is based on the potyviral cleavage
FT                   sites."
FT                   /db_xref="GOA:Q911I2"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q911I2"
FT                   /protein_id="CAC50818.1"
FT                   /translation="GLQMFEVENLKVPTDTSMYTIENLHSRSTSRRFRLSVAEAVCSAI
FT                   PSGWSLSSAYEERSVCKCIFEQRHTYVGESPYWREFKRIHSDHVRGISSYEDFYAPSAL
FT                   TFDAYWKDLLKFNRISAGEPKWDEKALQCSMIATIRALESAGMVCTKIRTVHEVLSDVQ
FT                   WSTAAGPLYAMKKKELCKNLSVEELDTLAIHVKTRLIKGDNCGVWNGAMKAELRPIEKV
FT                   QANKTRVFTAAPLTTLIASKFFVDDFNKQFYTTHLKAPHTVGINKFARGWEKLYEYLHV
FT                   DGWLHGSGDGSRFDSSIDDFWFDKLYTIRAHFFCKSDKDVAKQALGNMYREFLYTPIHT
FT                   TSGNILVKQVGNNSGQPSTVVDNTLILMMSFYYAYIMKTQDFDCEHIHKRMKFVCNGDD
FT                   NKFSLAPSFVKEFGGEFTTEIKQLGLTYEFDDLTDDITENPYMSLTMVRTSSGIGFSLH
FT                   PSRIIAIVQWIKKGDIIQATQAAFAAMIEAYNDPWLFSILHLYLVWLLIEYKDALNFAR
FT                   VNGIFGVVYFDPCQVHALHYGTPTVNEFEECESESCIDDDDFEAIEYCSQQFQMDLVGT
FT                   PTAPRQ"
FT   mat_peptide     <1..>1746
FT                   /gene="nib"
FT                   /product="NIb"
XX
SQ   Sequence 1746 BP; 537 A; 331 C; 401 G; 477 T; 0 other;
     gggttgcaaa tgtttgaagt tgaaaatctt aaagttccca cagacacgag tatgtacact        60
     attgaaaatc ttcattcaag aagcacgagc aggaggtttc gtttgagtgt cgctgaggct       120
     gtgtgctccg caatcccttc cggttggagt ctcagctcag catatgaaga acgtagcgtt       180
     tgcaaatgca tttttgaaca acgacacacg tatgttgggg aatcaccata ctggcgagag       240
     tttaaaagaa ttcatagcga tcatgtgcgt gggatttcct catatgagga cttctacgca       300
     ccaagtgcgt taactttcga tgcctactgg aaggatttac taaagttcaa tcgtattagt       360
     gcaggcgaac ctaagtggga tgaaaaagca ctacaatgct ccatgattgc aacaatacgc       420
     gcacttgaaa gcgcaggaat ggtttgcacg aagattagga cagtccatga ggttttatca       480
     gatgtgcagt ggtcaacggc agctggaccc ctttatgcta tgaagaaaaa ggaactgtgc       540
     aaaaaccttt cagttgaaga gttggatact ttagcaatac atgtcaaaac aagattgatc       600
     aaaggggaca attgtggggt ttggaatggt gctatgaaag ctgaattacg tccaattgaa       660
     aaagtgcaag ccaataagac gcgagttttc acagcagctc ctttaacaac attaatagct       720
     tcaaagttct ttgtcgatga cttcaacaaa cagttctaca caacacacct caaagctcca       780
     catactgttg ggataaacaa attcgcacgc ggatgggaaa agttatacga gtacttacat       840
     gtagatggct ggttgcatgg gagcggggat ggatcaagat tcgattcttc gattgatgac       900
     ttttggtttg ataagcttta cacgattagg gcacatttct tctgcaaaag tgataaggat       960
     gttgcaaaac aagctctcgg aaacatgtac agagaattct tatacacacc aattcacaca      1020
     acttccggaa atatcctagt caagcaggtg ggcaacaaca gtggacaacc aagtacagta      1080
     gtcgacaaca ccttaatttt aatgatgtcc ttttattacg cttacatcat gaagacacaa      1140
     gatttcgatt gtgagcacat acataaacgg atgaaattcg tctgtaatgg ggacgataac      1200
     aaattctcac tggccccaag cttcgtcaag gagtttgggg gagagttcac aactgagatt      1260
     aagcaacttg gtttgacgta tgaattcgat gatctcaccg acgatataac ggagaatcca      1320
     tacatgagtt taacaatggt gcggacgtcg agtggcattg gtttttctct gcatccatct      1380
     agaatcattg caattgttca gtggatcaaa aagggagata ttattcaagc aacgcaagca      1440
     gcatttgcag caatgattga ggcatacaat gacccatggc tctttagtat cttgcatctc      1500
     tacctggtat ggttgctcat tgagtataaa gatgctttga actttgcgag ggtcaatggt      1560
     atttttggag tcgtttactt tgatccatgt caagttcatg cactacacta tggtactcca      1620
     acagtcaatg aatttgagga atgtgagagc gagagttgca ttgatgacga tgattttgag      1680
     gctatcgaat attgttctca gcagtttcaa atggatttag taggcacgcc aacagcacca      1740
     agacaa                                                                 1746
//