ID AJ316085; SV 1; linear; genomic RNA; STD; VRL; 6985 BP. XX AC AJ316085; XX DT 06-FEB-2002 (Rel. 70, Created) DT 15-NOV-2002 (Rel. 73, Last updated, Version 4) XX DE Scallion virus X, complete genome XX KW coat protein; complete genome; RNA polymerase; triple gene block protein 1; KW triple gene block protein 2; triple gene block protein 3. XX OS Asparagus virus 3 OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6985 RA Adams M.J.; RT ; RL Submitted (24-AUG-2001) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s007050200018. RX PUBMED; 12038680. RA Chen J., Zheng H.Y., Chen J.P., Adams M.J.; RT "Characterization of a potyvirus and a potexvirus from Chinese scallion"; RL Arch. Virol. 147(4):683-693(2002). XX DR MD5; a920bb23c417f60fec224ee5fdd967a2. XX FH Key Location/Qualifiers FH FT source 1..6985 FT /organism="Asparagus virus 3" FT /host="Allium chinense" FT /mol_type="genomic RNA" FT /country="China:Zhejiang: Hangzhou" FT /db_xref="taxon:445435" FT 5'UTR 1..81 FT CDS 82..4977 FT /product="RNA polymerase" FT /db_xref="GOA:Q8QXK9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8QXK9" FT /protein_id="CAC87086.1" FT /translation="MARVRASLEKIRDPSVQTAISEAAYAHVRPVLKEALVNCPYALND FT AEADCLENFGITVNPYATQTHTHAACKAIENRMLEIVGKHLPKERCTMLFLKRSKLRYL FT RRAAALKDDFINQDIEPKDLFRYDRDTIRTRLKDITTPIAYMSDTLHFMSHTELMLLFA FT DSPPLQTMLATLVLPIEAMHRRTTLYPALYSINYGPKGFEYIPGNHGGGAYFHPYDTLD FT WLKVRQLRGEDHHGIDPTITLTFQLVESLGANHLFIIQRGDLRTPLVRTFCRDTLVTMP FT KIFCPDSMNANRPLTKTKAMQMLMYCKSVKQVSERDIYAKFRQMISTPELELYEPDEMV FT HLCNYFHFVAHLDSITCYDDLLGNSLWATPHHPRTHQSHPILDFFRGQNNFSKLLAALK FT WEPFSYSLEPNDFTVSYDGHSARALADRTGLSLTVAAATIKDSRADPTLFTEADLEDTP FT FEDFLGRLTYPIPTNQEGSPRDTEPESPSISGATQVFHFNTSAQALTSSPESPQAQEWP FT EVHHSSWLAATFHHMLGELPFAQTVGRRTYLFASPPVLFSDPDLTHHTNLAWQPILSDV FT VDSLGISATACFIQVYDEGLNQPWRCNYGRKPESDVISTLTLGQAELELAGGKRLSLKE FT GDWFTINGPLLQRGHHISVGSPQCITLTFWLHMSPVASASPLQNWLSVQPTSPAESSRG FT KCAPNLAHQPSNPVDTHYVPSRNRAQSLTTDNTPLIHKAVSTRTPLTPIPDDVATANST FT CAIPWVSWVPLLQSHGFDGTQLQHDPAGSLIIPVQDIRRLAHANYPEEVPASLQDTLNA FT IKRFPVTIKIDHQRASSYASDIKNCRTGKLLTQMDLKWKSSFAYKMQHEDKQVAGTVIH FT GCGGSGKSHAIQKWMRTLPADQSTVTVITPTVILRNDWGTKLPILPSETFKTFEKGIIQ FT PCNPVVIFDDYTKLPPGSIEATVMHHSNISYIVLTGDSRQSVYHELNAEAYIATLPEAV FT DVFTPFCEFYLNATHRNVQALANKLGVYSERQGRLKVNFASHHLKASRTPLLVPSTMKR FT NAMADMGHHGMTYAGCQGLTAPKIQILLDNHTQFCSDRVLYTCLSRAVDSIHFINTGPT FT TGDYWTKLESTPYLKAFIDTYRDEKTELYNAEPASDAPVEPEAPCTHFPPAPKPLLEPL FT VSELSAKEDREIFSKSAGYSDTIQTEDPEVQLFQHQQAKDETLYWATIDARLSLATPED FT NLLEFNMKRDVGDILFMNYAKVMNLPAEPVQFEERLWEISAAEVRNVYLSKPIGNLVNA FT ASRQSPDFPKHKIALFLKSQWVKKVEKLGALKVKPGQTIASFMQETVMLYGTMARYLRK FT MRQRFQPPNIFINCERTPDDLDVFVKTHWNFSRPAHTNDFTAFDQSQDGAMLQFEVMKA FT KFFNVPSEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHIDSG FT TAQVYAGDDMALDRICPEKSSFHRLENQLKLTSKPMFPRQTTGDYAEFCGWVFTPAGII FT KHSLKMYASIQLQKKLNNIKESARSYALDLRYAYKLGDNLQEHLTEEEAAYHQQSVRDM FT HLLHQAEVLAHGSSSPPHSFSTAEPNRTKTQKRNATKRKSKVRIAEILPPDY" FT CDS 5008..5751 FT /product="triple gene block protein 1" FT /function="cell to cell movement" FT /db_xref="GOA:Q8QXK8" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q8QXK8" FT /protein_id="CAC87087.1" FT /translation="MEVSYIVELLDFLGFTRSRRPFSLPLVVHGVAGSGKTYLLRKVSS FT HFPHLVHCSFAPQIIDSNSGRKQAPVTSEPTDLLDEYLGGPNPLVRLLKVCDPLQYDCP FT EPEVPHYVSLTTRRFCPLTTTLLNSLFGCDIVSLVDRNCHIQIHDPYTDDPIGTVVSLS FT PDIGALLLRHGCATTPIADLWDVNLSVVSCYLHSLEEALTHYRAPLFLTLTRHTAELHI FT FLFDARTDAAHELRNRLQDFGHRSS" FT CDS 5684..6043 FT /product="triple gene block protein 2" FT /function="cell to cell movement" FT /db_xref="GOA:Q8QXK7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8QXK7" FT /protein_id="CAC87088.1" FT /translation="MPGLTPPTNYETVFKILAIGALSCLSIYALRANQLPHTGDNIHHL FT PHGGNYADGTKRIQYFRPGGNLHDHSKFTAGCVVFFLTLLILVQSQWPSRTIRSSVHVC FT THCPQTPTLSGDHHR" FT CDS 5886..6137 FT /product="triple gene block protein 3" FT /function="cell to cell movement" FT /db_xref="GOA:Q8QXK6" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8QXK6" FT /protein_id="CAC87089.1" FT /translation="MTTPNSQQGVSSSSSLSSFWFSLNGLLVLSGVLFMFALIAPKPQP FT CLVIITGEAVRISGCADPSLILAHINLAPWNGVKFPIS" FT CDS 6186..6878 FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:Q8QXK5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8QXK5" FT /protein_id="CAC87090.1" FT /translation="MDKLDAGQPQRKQAEPVPADLSDPTRAPSLKELQAVKYVSTTTSV FT ATPDEIKQLGELFQKLGVDGSSIGPAMWDLARAYADVQSSRSAMLAGTTPSNPAITRQA FT LARQFYIVNITPRQFCMYFAKVVWNMMIDSNVPPAGWVKHGLPEDCKFAGFVFFEGVLS FT PSSLDPADGLIRHPSQREIQAHSTAKYGALARQRIQNGNFVSNLAEVTHGRAGGVNSMY FT AIEAPPEL" FT 3'UTR 6879..6985 XX SQ Sequence 6985 BP; 1734 A; 2228 C; 1456 G; 1567 T; 0 other; ggaaaacaaa acaacacaga aacactcgca acttaactgc ccatataagg agaataaccg 60 caccccgcac tataatccca tatggccaga gtacgagcgt cgttggagaa gatccgggac 120 ccatctgtac aaacagctat ctctgaagct gcttacgcac atgtacgccc tgttctaaaa 180 gaagccctcg ttaattgccc ctatgctctc aatgatgccg aagcggactg ccttgaaaac 240 ttcggtatta ctgtaaatcc gtacgccacc caaactcaca cacacgccgc ttgtaaagcg 300 atagagaata ggatgttaga aatagtaggt aaacatctcc caaaagaacg ctgcacaatg 360 cttttcctga aacgcagcaa gctaagatac cttagacgtg ccgcagcctt gaaagatgac 420 ttcatcaacc aggacattga acctaaggac ctttttcgtt acgatcggga tactatacga 480 acccgcctta aggatattac taccccaata gcctatatgt ccgacaccct acacttcatg 540 tcccacacgg agttgatgtt gcttttcgct gattctccgc cactccagac catgttggcc 600 actttagtct tgccgatcga ggctatgcat cgccgcacca cgctataccc cgccctctac 660 agcatcaact acgggcccaa aggatttgag tacataccag gtaatcatgg gggaggtgcc 720 tacttccacc cctacgacac cctagactgg cttaaagtgc gccaactccg gggggaagac 780 catcacggaa ttgaccccac tattacactc actttccagc tggtggaaag cctgggcgct 840 aaccatctct ttatcatcca acgaggcgac ctccggactc cgctggtacg cacattctgt 900 agagacacac tggtcaccat gcccaaaatc ttttgccccg actccatgaa tgccaaccgt 960 cccctcacca agacaaaagc catgcagatg ctgatgtatt gcaaatctgt caagcaagta 1020 agtgaacggg acatctacgc aaagttccga caaatgatct ccacccctga actggagctt 1080 tacgagcccg acgagatggt gcacctctgt aactactttc acttcgtagc tcatttggac 1140 tcaatcactt gctacgacga cctcctaggc aattctttat gggcgacgcc tcaccatccc 1200 cgtacgcacc aaagtcaccc aattttagac ttcttccgtg gacagaacaa tttcagtaag 1260 ctgctggctg cacttaaatg ggaacccttt tcctattccc tggagcctaa cgacttcacc 1320 gtgtcatacg acggccattc cgctcgcgcc cttgccgaca ggactggact gtctctcacc 1380 gtcgctgccg caaccatcaa agacagtcgg gccgacccca cactcttcac cgaggctgac 1440 ctagaagata ctccttttga ggactttcta ggccgtctaa cttaccccat tccaaccaac 1500 caggaggggt caccgcgtga cacggagcca gaaagcccat ctattagcgg cgccacacaa 1560 gtcttccatt tcaacacctc agcgcaggct ttaaccagct ccccagagtc cccccaggca 1620 caagagtggc ctgaagttca ccacagcagc tggttggccg ctactttcca tcacatgctc 1680 ggtgaattgc cattcgcaca aactgtaggc agacgcacct acctcttcgc ctcaccgccc 1740 gtgctcttct ctgacccaga cctcacccac cacaccaatt tagcctggca acccattctc 1800 tccgatgtgg ttgattcctt gggcattagc gccaccgcct gcttcataca ggtgtacgac 1860 gaaggcctca accaaccatg gcgctgcaac tacggaagaa aacccgagtc cgatgtcatc 1920 tcgaccttaa ctttaggcca ggccgagctc gagttagctg gtgggaaacg cctcagcttg 1980 aaagaaggtg actggttcac catcaacggc cctttactcc agcggggtca ccatatctca 2040 gtgggctcgc cacaatgcat cacactcact ttctggctgc acatgagccc cgtggcaagc 2100 gcatcaccac tccagaactg gctttccgtc caacccacct cgccggcaga aagctcacgg 2160 ggaaagtgtg ctcccaactt ggcacaccag ccctccaatc ctgttgacac ccactatgtc 2220 ccgagccgca accgagctca aagtcttaca accgacaaca cgccgctcat acacaaggct 2280 gtcagcactc gcaccccact cacgccaatc ccagacgacg tggccactgc taattccacg 2340 tgtgccatac catgggtcag ttgggtgccc ctcctccaga gccacggttt cgatggcaca 2400 caactccagc acgaccccgc cggcagttta atcatccccg tccaagacat tcggcggctt 2460 gcccatgcta attaccccga agaggtgccc gctagcttgc aggacacttt gaatgccatc 2520 aagcgcttcc ccgtgacgat taaaattgac caccaacgag ccagctcata cgcctccgac 2580 atcaaaaatt gtagaactgg caagttgctt acccagatgg acctcaaatg gaagtcttcc 2640 ttcgcttaca agatgcagca cgaggataag caggtagccg gcactgtcat tcatgggtgc 2700 ggcggctctg gcaaatctca cgccatccaa aagtggatgc gcactctccc cgcggatcag 2760 agcacggtca cggtcatcac ccccacagtc atcctccgga acgactgggg caccaaactg 2820 cccatcttgc ccagcgaaac ctttaaaacc tttgagaagg gcatcatcca gccttgcaac 2880 ccagttgtga tcttcgacga ctataccaaa ctgccccccg gatccataga agccacggtc 2940 atgcaccata gcaacatatc ctacatagtg ctcactggag acagccggca gtctgtgtac 3000 cacgaactca acgccgaagc ttacatcgcc acgctgcctg aagctgtcga tgtcttcacc 3060 ccgttttgcg aattctacct caatgccacc caccgcaacg tccaagcttt ggccaacaag 3120 ctgggggttt attcagagcg ccaaggtaga cttaaagtca atttcgcctc ccaccacctc 3180 aaggcctcca ggacgcctct gctagtgccc tccaccatga agcggaatgc catggcggac 3240 atgggccacc acggtatgac atatgccgga tgccaaggac tcacggcccc aaaaatccaa 3300 attcttctgg acaatcacac tcaattctgc tccgaccggg tgctctatac ctgcctctct 3360 cgcgcggttg actccatcca cttcataaac actgggccca ccacggggga ctattggacc 3420 aagcttgaga gcactccata cttgaaagct ttcattgaca cctacaggga cgagaagacg 3480 gagctttaca atgccgaacc agcatctgac gcccccgtcg aacccgaagc cccttgcacc 3540 cacttcccac cagcgcccaa accgttactc gagcccctcg tttccgagtt atctgccaaa 3600 gaggataggg agatcttctc taagtccgcc ggctactccg acaccatcca gacggaagac 3660 cccgaggtcc aattatttca gcaccaacaa gccaaagacg agactttata ttgggccacc 3720 atcgacgctc ggctttcact tgccaccccc gaggataatc tactcgaatt taacatgaag 3780 agagatgtgg gcgacatcct ctttatgaac tacgctaaag tcatgaacct ccccgctgaa 3840 cctgtccaat tcgaggagcg attgtgggaa atctccgctg ctgaggtgcg caatgtctac 3900 cttagcaaac ccatcggcaa tcttgtcaat gctgcctccc gtcagtctcc cgactttcca 3960 aagcataaaa tagccctctt tctgaaatct cagtgggtta agaaagtaga aaagctgggt 4020 gcacttaaag tcaagccagg gcaaaccata gcttctttca tgcaggaaac cgttatgttg 4080 tatggcacga tggcccgata cttgcgtaag atgcgtcagc gcttccagcc accgaacatt 4140 ttcatcaact gcgagcggac gccagacgac ctagacgtct ttgtcaagac ccattggaac 4200 ttctcccgcc ccgcccacac caatgacttc accgcgttcg accaatctca agacggcgcc 4260 atgctacagt ttgaagttat gaaagctaag ttctttaacg tgccctccga aatcatcgaa 4320 ggctacattt acatcaaact gaacgctgcc attttcctag gcactcttgg cataatgcga 4380 ctttccggag aggggcctac ttttgatgcc aatactgaat gctcaatcgc ctacaacgcc 4440 actcgcttcc acattgacag tggaactgcc caggtttacg ccggcgacga catggccctc 4500 gaccgcatct gcccggagaa atctagcttc cacagactgg aaaaccagct caaacttact 4560 tccaagccta tgtttccgcg gcaaacaacc ggtgattacg cagaattctg tggctgggtg 4620 ttcactcccg ccgggattat caaacattca ctcaagatgt acgcctctat ccagcttcag 4680 aagaaattga ataatattaa ggaaagtgct cgctcttatg cgctggacct ccggtatgcc 4740 tacaaattgg gcgataatct ccaggagcat ctaaccgagg aggaagccgc gtaccatcaa 4800 caatccgtgc gggacatgca tttgctgcac caggccgaag ttctcgcaca tggctcgtct 4860 agtccgccgc actcattttc aacggccgag cctaaccgta caaagaccca aaagcgtaat 4920 gccaccaagc ggaaatccaa agtgcgaatt gccgaaattc tacccccgga ctactaacgg 4980 ggttaagtaa ccttttagta tttcgatatg gaagttagtt atattgtaga acttttagat 5040 tttcttggtt tcacccgttc cagacgtccc ttttcccttc ccctggtagt acacggcgtc 5100 gcaggctccg gcaaaaccta cctccttcgc aaagtcagtt cacactttcc ccacctggtc 5160 cactgcagtt tcgcccccca aatcatagac tcaaattcag gtcgcaaaca ggcgcccgtc 5220 acttcagaac ctacggacct ccttgacgaa tatttgggcg gccccaatcc cttggtacgg 5280 ctgttgaaag tttgcgatcc gctccagtac gactgccccg agcctgaagt accacattac 5340 gtctcactca ccaccaggcg gttttgccca ttaactacga ccctgcttaa ctccctgttt 5400 gggtgcgaca tagtttctct cgtcgatcgc aactgtcata tacaaattca cgacccctac 5460 acagacgacc caattggaac cgtcgtctcc ctctcccccg acattggtgc gttactcctc 5520 cgtcacggct gcgcaacaac gcccatcgcc gacttgtggg atgtcaatct cagtgttgtc 5580 tcctgctact tgcactccct agaagaggcc ctcacccact accgggcccc tttgtttctg 5640 actcttacac gacacacagc tgaactgcac atcttccttt tcgatgcccg gactgacgcc 5700 gcccacgaac tacgaaaccg tcttcaagat tttggccata ggagctctta gttgtctctc 5760 catctacgca ctccgtgcca atcaactacc tcacacgggt gacaatattc accacctacc 5820 ccacggcggc aactacgcag acggtaccaa gaggatccaa tacttccgac ccggcggcaa 5880 cctacatgac cactccaaat tcacagcagg gtgtgtcgtc ttcttcctca ctctcctcat 5940 tttggttcag tctcaatggc cttctcgtac tatccggagt tctgttcatg tttgcactca 6000 ttgcccccaa accccaaccc tgtctggtga tcatcaccgg tgaggcagtg cgcatctctg 6060 gctgcgcaga cccaagcctt atcttagccc acatcaacct cgcaccctgg aacggggtta 6120 agtttcctat ttcctagttt gaaaatttta tttagtttag tattgaacgt ttcgggttaa 6180 ccctcatgga caaattagac gctggacaac ctcagcgcaa gcaagcagaa cctgtccccg 6240 ccgacctttc cgatcccacc cgcgctccct cactcaaaga gctgcaggct gtcaaatacg 6300 tgtcaaccac cacctcagtc gctacgccgg acgaaatcaa acaactcggc gaactcttcc 6360 agaagctcgg tgtagacggt tcttccatag gcccagcaat gtgggatctt gcacgtgctt 6420 acgccgatgt acaatctagt cgctctgcga tgctggctgg caccacccca tctaaccccg 6480 ccataactcg ccaggccctt gcacgccaat tttacatagt caacatcact ccacggcagt 6540 tctgcatgta cttcgcaaag gtagtttgga atatgatgat cgactcaaac gtgccccccg 6600 ctggttgggt aaaacatggg ctccccgaag attgcaagtt cgccggcttc gtcttctttg 6660 aaggcgtgct ttcaccttca tcgctcgacc ccgccgacgg cttgatccgt cacccctccc 6720 agcgtgagat ccaggcacat tcaaccgcca aatacggagc ccttgcgcgc cagcggatcc 6780 aaaatggaaa cttcgtgtca aacttggccg aggtcaccca cggacgcgct ggcggagtca 6840 actctatgta cgccattgag gccccccccg aactataata gcattaggca acttaaatta 6900 atgcgtggtt ttctacagtt tattttccac atcagactct ccatcctact agctttatcc 6960 gcatgtatga atgtaagttt gtttt 6985 //