ID AJ314739; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AJ314739; XX DT 04-JAN-2002 (Rel. 70, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 6) XX DE Indian cassava mosaic virus-[Maharashtra] DNA-A, complete genome, isolate DE ICMV-Mah XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC4 protein; AV1 gene; AV2 gene; KW AV2 protein; coat protein; complete genome; replication enhancer protein; KW replication-associated protein; transcriptional transactivator protein. XX OS Indian cassava mosaic virus-[Maharashtra] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Stanley J.; RT ; RL Submitted (29-MAY-2001) to the INSDC. RL Stanley J., Department of Virus Research, John Innes Centre, Norwich RL Research Park, Colney, Norwich, NR4 7UH, UNITED KINGDOM. XX RN [2] RX DOI; 10.1006/viro.2001.1251. RX PUBMED; 11853400. RA Saunders K., Salim N., Mali V.R., Malathi V.G., Markham P.G., Stanley J.; RT "Characterisation of Sri Lankan cassava mosaic virus and Indian cassava RT mosaic virus: evidence for acquisition of a DNA B component by a RT monopartite begomovirus"; RL Virology 293(1):63-74(2002). XX DR MD5; 45f7c52ca34ea55657da8b6e9103847d. DR BioSample; SAMEA3283061. DR EuropePMC; PMC1079959; 15784145. DR EuropePMC; PMC2816314; 20104645. DR EuropePMC; PMC2901266; 20546567. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Indian cassava mosaic virus-[Maharashtra]" FT /segment="A" FT /lab_host="Nicotiana benthamiana" FT /isolate="ICMV-Mah" FT /mol_type="genomic DNA" FT /country="India:Maharashtra state" FT /clone="pICM18" FT /db_xref="taxon:223281" FT CDS 138..494 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q8UZ59" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8UZ59" FT /protein_id="CAC85471.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVECTYSPDTLGYELIRDL FT ISVIRAKNYVEATSRYHNFNSRLEGSSPSELRQPIQQPCGCPYCPRHKKTILDKQTHES FT EAQVVSDVQKPRCS" FT CDS 298..1068 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8UZ58" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q8UZ58" FT /protein_id="CAC85472.1" FT /translation="MSKRPADIIISTPGSKVRRRLNFDSPYSSRAAVPTVRVTKRQSWT FT NRPMNRKPRWYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGIGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1065..1469) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q8UZ57" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8UZ57" FT /protein_id="CAC85473.1" FT /translation="MDSRTGELITAAQAMNGVFIWEVTNPLYFKIIQHDNRPFVMNQHI FT ITVQIRFNHNLRRALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDSLGVISINT FT VVNAVEHVLYNVIHETDRVEQSNLIKLNIY" FT CDS complement(1210..1617) FT /gene="AC2" FT /product="transcriptional transactivator protein" FT /db_xref="GOA:Q8UZ56" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8UZ56" FT /protein_id="CAC85474.1" FT /translation="MRPSSPSKDHYTQVPIKVQHRAAKRKAIRRKRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGNKSPLFQDHSARQQTVRNEPAHNNRPDTVQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1547..2605) FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:Q8UZ55" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8UZ55" FT /protein_id="CAC85475.1" FT /translation="MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRNFQTPTNPKFIK FT ICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFH FT HISSNLDRIFTKPPPPYENPFPLSSFDRVPEELDEWFHENVMGAAARPLRPKSIVIEGD FT SRTGKTMWSRALGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEGPL FT YSGTNQGPTQSC" FT CDS complement(2146..2454) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="GOA:Q8UZ54" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8UZ54" FT /protein_id="CAC85476.1" FT /translation="MRMGSLICTCSSSSKANTNARISDSSTWYHQPGQHISIQTFRELN FT PAPTSSPTSTRTVIPWNGEHFRSMDDRPEGVNNLQTTLTPRHLTAAVNQRLLRSLGN" XX SQ Sequence 2739 BP; 674 A; 584 C; 675 G; 806 T; 0 other; accggatggc cgcgcccccc gctttgtggt ggccccctcc cccacgtgga gatgtccccc 60 actcagaacg ctcgctcaaa gcttgtatat gtgtggtccc cctttaagta cttgggcaac 120 aagttgttgc ctgtacaatg tgggaccctt tactaaacga gttccctgag tctgtccacg 180 gtttccggtg tatgctcgcc gtgaaatacc ttcagctggt tgaatgtact tattctcctg 240 atacactcgg ttacgagtta attagagatt tgatctctgt tattagggcg aagaattatg 300 tcgaagcgac cagcagatat cataatttca actccaggct cgaaggttcg tcgccgtctg 360 aacttcgaca gcccatacag cagccgtgcg gctgtcccta ctgtccgcgt cacaaaaaga 420 caatcctgga caaacagacc catgaatcgg aagcccaggt ggtatcggat gtacagaagc 480 ccagatgttc ctaagggctg tgaaggccca tgtaaggtcc agtcattcga gtcgagacac 540 gatgtggtcc atataggtaa ggtcatgtgc atttctgatg tcactcgtgg aattgggctt 600 actcatcggg tgggtaagag gttttgcgtt aagtccgttt acatcctggg caagatatgg 660 atggatgaaa acattaagac caagaatcac acgaatagcg taatgttctt ccttgtaagg 720 gatcgtaggc ctgttgataa gcctcaggat tttggtgaag tatttaatat gtttgataat 780 gagcccagta cagctactgt gaagaacatg catcgtgatc gctatcaagt tctcaggaag 840 tggagtgcca ctgtcactgg tggtcagtat gcgagcaagg agcaggcttt agttaggcgt 900 ttctttaggg ttaataatta tgttgtgtat aaccagcaag aggctgggaa atatgagaac 960 catactgaga atgcattaat gttgtacatg gcgtgtacgc atgcctctaa tcctgtatac 1020 gctacgttga agattagaat ctacttctat gattcagtga gcaattaata aatatttaat 1080 tttattaaat tagactgctc aacacggtca gtctcatgga ttacattgta taatacatgc 1140 tctacggcgt ttacaacagt attaatactt ataactccta agctatctaa gtatttcaat 1200 acttgggtct taaataccct caagaaacgc caggtctgag gctgtaaggt cgtccagacc 1260 ttgaaatcca tccagcattg atgtagtccc aacgctctcc tcaggttgtg gttgaaccgt 1320 atctggacgg ttattatgtg ctggttcatt acgaacggtc tgttgtcgtg ctgaatgatc 1380 ttgaaataga ggggatttgt tacctcccag ataaagacgc cattcatcgc ctgagctgca 1440 gtgatgagtt cccctgtgcg tgaatccatg gttgtggcag ttaatgtgga cgtagtacga 1500 gcacccgcag ttgagatcta cccttttacg ccggatggct ttacgcttag cagctctgtg 1560 ttggaccttg attggtacct gagtatagtg gtccttcgag ggagatgaag gtcgcatttt 1620 tcagagccca ggcttttaat gcgctattct tttcctcgtc caggaattct ttatagctgg 1680 aattggggcc tggattgcag aggaagatag tgggaatacc tcctttaatt tgaactggct 1740 ttccgtactt ggtgtttgat tgccagtccc tctgggcccc catgaattct ttgaagtgct 1800 ttaggtagtg gggatcgacg tcatcaatga cgttgtacca tgcatcattg ttgtagacct 1860 taggacttaa atccaggtgt ccacataggt aattatgtgg acccaatgca cgggaccaca 1920 tggtcttgcc cgtccgacta tcgccttcga ttacgattga ttttggtctc aaaggccgcg 1980 cagcggcacc catcacgttt tcgtggaacc actcgtcgag ttcttctgga actcggtcaa 2040 acgaagagag agggaaaggg ttctcatatg gaggtggtgg ttttgtaaaa atccgatcca 2100 ggtttgagct gatgtgatgg aagtccctaa gataatccct aggtgctaat tccctaagga 2160 tcttaagagc ctctgattta ctgccgctgt taagtgccgc ggcgtaagcg tcgtttgcag 2220 attgttgacc ccctctggcc gatcgtccat cgatctgaaa tgttccccat tccaaggtat 2280 caccgtcctt gtcgatgtag gacttgacgt cggagctgga tttagctccc tgaatgtttg 2340 gatggaaatg tgctgacctg gttggtgata ccaggtcgaa gaatcgctga ttctggcatt 2400 tgtatttgcc ttcgaactgg atgagcacgt gcagatgagg ctccccattc tcatgtagct 2460 ccctgcatat tttgatgaat ttaggatttg taggtgtttg aaagttccta atttgagaga 2520 gagcctcttc tttagttaag gagcatcgag ggtaagtgag gaaatagttt ttagcgttta 2580 tttgaaagcg cttaggtggt gacattctct ctcctcaatc ggtactcaga tagtttagcc 2640 cccatattag gtactcaata tatacatgag taccaaatgg catagatgta aataatggga 2700 atataatttg aattcaaaag cggccatccg tataatatt 2739 //