ID AJ314738; SV 1; circular; genomic DNA; STD; VRL; 2711 BP. XX AC AJ314738; XX DT 04-JAN-2002 (Rel. 70, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 5) XX DE Sri Lankan cassava mosaic virus-[Colombo] DNA-B, complete genome, isolate DE SLCMV-Col XX KW BC1 gene; BV1 gene; complete genome; movement protein; KW nuclear shuttle protein. XX OS Sri Lankan cassava mosaic virus-[Colombo] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2711 RA Stanley J.; RT ; RL Submitted (29-MAY-2001) to the INSDC. RL Stanley J., Department of Virus Research, John Innes Centre, Norwich RL Research Park, Colney, Norwich, NR4 7UH, UNITED KINGDOM. XX RN [2] RX DOI; 10.1006/viro.2001.1251. RX PUBMED; 11853400. RA Saunders K., Salim N., Mali V.R., Malathi V.G., Markham P.G., Stanley J.; RT "Characterisation of Sri Lankan cassava mosaic virus and Indian cassava RT mosaic virus: evidence for acquisition of a DNA B component by a RT monopartite begomovirus"; RL Virology 293(1):63-74(2002). XX DR MD5; 0a0dde70171b1913a49a3114818b301d. DR BioSample; SAMEA3283060. XX FH Key Location/Qualifiers FH FT source 1..2711 FT /organism="Sri Lankan cassava mosaic virus-[Colombo]" FT /segment="B" FT /lab_host="Nicotiana benthamiana" FT /isolate="SLCMV-Col" FT /mol_type="genomic DNA" FT /country="Sri Lanka:Columbo" FT /clone="pSL4" FT /db_xref="taxon:223328" FT CDS 185..1123 FT /transl_table=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /db_xref="GOA:Q8UYW7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:Q8UYW7" FT /protein_id="CAC85469.1" FT /translation="MSEGPMCGYLTAYCANGLNVARSCRLLGTILLCCGLYIWVCRVLR FT SAHGCFRMRRGAYTPRSTPFPRDRRSYNAGKGRSFRSYRRRGPVRPLARRNLFGDDHAR FT AFTYKTLSEDQFGPDFTIHNNNYKSSYISMPAKTRALSDNRVGDYIKLVNISFTGTVCI FT KNSQMESDGSPMLGLHGLFTCVLVRDKTPRIYSATEPLIPFPQLFGSINASYADLSIQD FT PYKDRFTVIRQVSYPVNTEKGDHMCRFKGTRRFVGRYPIWTSFKDDGGSGDSSGLYSNT FT YKNAILVYYVWLSDVSSQLEMYCKYVTRYIG" FT CDS complement(1132..1992) FT /transl_table=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:Q8UYW6" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:Q8UYW6" FT /protein_id="CAC85470.1" FT /translation="MENNSSNAAYLRSERVEYELTNDSTDVKLSFPSLLDTKISLLKGH FT CCKIDHIVLEYRNQVPINATGHVIIEIHDQRLHDGDSKQAEFTIPVQCNCNLHYYSSSF FT FSMKDINPWRVMYRVVDTNVINGVHFCRIQGKLKLSTAKQSNDIQFRSPKIEILSKAFT FT ERDIDFWSVGPKAQQRKLVQGPSLIGSRSKRYAPCSIGPNESWAVRSEIGLNGPWAVTS FT EAGPSFERPYSQLNRLNPDALDPGKSVSQVGSNHFTREDLNDIISKTVDMCLNTSMQSH FT VSKNV" XX SQ Sequence 2711 BP; 712 A; 540 C; 623 G; 836 T; 0 other; accggatggc cgcgtccccc tctttatggt ggcccccccc acgttgggat gtccccctct 60 cacaacgcgc actaggaggt tcaacatgtt agtggcccca cgatgttgtt tataacgtct 120 ataacgtttg agactcgaag catgtgatgc cacgtatgcg ttatttgtac ttcgtctcga 180 agttatgagt gagggcccta tgtgtggata tctaaccgca tattgtgcga atggattaaa 240 cgtggcaaga tcatgccgtt tattgggaac tatattatta tgctgtggtc tatatatatg 300 ggtatgtcgt gtattgagat ctgcacatgg ttgtttcagg atgagaagag gtgcttatac 360 cccccgttct acgccattcc ctcgtgaccg gagatcgtat aatgccggta agggtagatc 420 ctttcgttcg taccgtcgtc gtggacctgt tcgtccatta gctcgtcgga acctgtttgg 480 tgatgaccat gcacgtgcat tcacgtataa gaccttatcg gaggatcaat ttggaccgga 540 ctttaccata cataataata attataagtc atcttatata tctatgcctg ccaaaacacg 600 tgcccttagc gataacaggg taggtgatta tatcaaactt gtaaatatat catttacagg 660 tacagtgtgt ataaaaaaca gccagatgga gtctgacgga agcccaatgt tgggcctgca 720 tgggctgttt acttgtgtat tggtccggga taagacccct cgtatatatt ctgccactga 780 gcctttgata cctttcccac agttgtttgg gtccataaac gcgagctatg cggatttgtc 840 tatacaagac ccatataagg atcgattcac agttatccgt caggtgtctt acccagttaa 900 tacggagaag ggtgatcata tgtgtcgttt caaaggcact cgtcgttttg ttggtagata 960 ccctatctgg actagtttta aagatgatgg tggcagtgga gattcatcgg gattatatag 1020 taatacgtat aaaaatgcca tacttgtata ttatgtatgg ctcagcgacg tatcgtcaca 1080 attggaaatg tattgtaaat atgtaactcg atatattggt taataaaaat gttatacatt 1140 tttggataca tgactttgca tactcgtatt taaacacata tctactgtct tgctgatgat 1200 gtcgtttaag tcctctcgtg tgaagtggtt cgatcctact tgtgatactg actttcctgg 1260 gtccaatgcg tctgggttga gccggtttag ttggctgtaa ggcctttcaa atgatggccc 1320 agcctcgctc gtaacggccc atggcccgtt aagcccaatc tcgcttctaa cggcccatga 1380 ttcatttggg cctatggaac atggagcata tctcttggag cgggatccta ttagacttgg 1440 gccttggacc agtttcctct gctgggcttt tggacccact gaccagaaat caatgtccct 1500 ctcagtgaag gccttgctca gtatctcgat tttgggagat ctgaactgta tgtcattaga 1560 ctgctttgca gttgacagct tgagtttgcc ctgtatacgg cagaagtgga ccccgttgat 1620 gacgtttgtg tctacgactc tgtacataac cctccatggg tttatgtcct tcatggagaa 1680 gaacgatgaa gaatagtagt gaaggttgca attgcattgg acgggaatag taaattcagc 1740 ctgttttgag tctccgtcat gcagtctttg gtcgtgaatt tcaatgatga catgccctgt 1800 ggcgttaatg ggtacctggt ttctatactc taggacgatg tggtctattt tgcagcagtg 1860 acccttgagg agcgatattt tggtatccag aagagatgga aagcttaact tgacgtctgt 1920 tgagtcattg gttaactcat attcaactct ttcggaacga agatacgctg cattgctact 1980 attattctcc attggccccg caggggaaat gcttaaaaat taagcccagt gcagaagaaa 2040 taatttaatg tgcataaagc aaagcccaaa gcgcaataaa tagctaaagg catatatatt 2100 atattattga tgaaaggtta caagagcatc cacgtggcag tggattaaat acatgaaaag 2160 ctatacaata tatttaaaaa aagtgttgac gacgtcatct tcaacgaatg gaaccggaaa 2220 ccctaatcca tctctgagga ctctggtgaa gccctctagt agtatgtcac atgtttccgg 2280 tgtcatgtgg tagtaatttt tgagtttgta accccaatct tccattttga aggccatatg 2340 tatggctcta tctatttctg gtaacagatc catatcttgt tcttcgaatt ggaggtaata 2400 ggaatttgaa ccagtcgcga tgtaagattg atgtctgcta gtagttttga attcgaccca 2460 gatcgaattc ttcataatgc gactggatag tcgcacacat ttcttgctgt gttgcaagaa 2520 ggaatagtta gtttgggaag acataggaag gaggagaatg acttggtcaa ttggagacac 2580 ccctgagcaa gtctctagtg aattggagac attatatatt gtctccaaat ggcattcttg 2640 taattcctaa aagttacatt caaatttcaa agtcgaattt gaaatccaaa agcggccatc 2700 cttataatat t 2711 //