ID AJ314737; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC AJ314737; XX DT 04-JAN-2002 (Rel. 70, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 6) XX DE Sri Lankan cassava mosaic virus-[Colombo] DNA-A, complete genome, isolate DE SLCMV-Col XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AC4 protein; AV1 gene; AV2 gene; KW AV2 protein; coat protein; complete genome; replication enhancer protein; KW replication-associated protein; transcriptional transactivator protein. XX OS Sri Lankan cassava mosaic virus-[Colombo] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Stanley J.; RT ; RL Submitted (29-MAY-2001) to the INSDC. RL Stanley J., Department of Virus Research, John Innes Centre, Norwich RL Research Park, Colney, Norwich, NR4 7UH, UNITED KINGDOM. XX RN [2] RX DOI; 10.1006/viro.2001.1251. RX PUBMED; 11853400. RA Saunders K., Salim N., Mali V.R., Malathi V.G., Markham P.G., Stanley J.; RT "Characterisation of Sri Lankan cassava mosaic virus and Indian cassava RT mosaic virus: evidence for acquisition of a DNA B component by a RT monopartite begomovirus"; RL Virology 293(1):63-74(2002). XX DR MD5; 1f05c2bf8e67f38cf657f20da064909c. DR BioSample; SAMEA3283060. DR EuropePMC; PMC3163225; 21812981. DR EuropePMC; PMC387707; 15078963. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Sri Lankan cassava mosaic virus-[Colombo]" FT /segment="A" FT /lab_host="Nicotiana benthamiana" FT /isolate="SLCMV-Col" FT /mol_type="genomic DNA" FT /country="Sri Lanka:Columbo" FT /clone="pSL1" FT /db_xref="taxon:223328" FT CDS 135..473 FT /transl_table=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q8UYX3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8UYX3" FT /protein_id="CAC85456.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVEGTYSPDTLGHELIRDL FT ISVIRAKNYVEATSRYNYFYSRLEGSSPSELRQPIQQPCCCPHCPRHKKTAMGKQAHES FT EAQVVSDV" FT CDS 295..1065 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q8UYX2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q8UYX2" FT /protein_id="CAC85457.1" FT /translation="MSKRPADIIISTPGSKVRRRLNFDSPYSSRAAAPTVRVTKRQLWA FT NRPMNRKPRWYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGIGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1062..1466) FT /transl_table=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q8UYX1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q8UYX1" FT /protein_id="CAC85458.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFKIIQHDSRPFSMPWDI FT ITVQIRFNHNLRRALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGVISINT FT VVNAVEHVLYNVIHGTDRVEQSNLIKLNIY" FT CDS complement(1207..1614) FT /transl_table=1 FT /gene="AC2" FT /product="transcriptional transactivator protein" FT /db_xref="GOA:Q8UYX0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q8UYX0" FT /protein_id="CAC85459.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHPARQPAVQHAVGHNNRPDTVQPQ FT PEESVGTTPMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1544..2599) FT /transl_table=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:Q8UYW9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q8UYW9" FT /protein_id="CAC85460.1" FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLDFFRSLSLPTNIKFIKI FT CRELHHNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID FT KDGDTIDWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNIALKAWALKNATFISLSEPLY FT SGSNQGPTQSS" FT CDS complement(2143..2445) FT /transl_table=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="GOA:Q8UYW8" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q8UYW8" FT /protein_id="CAC85461.1" FT /translation="MGNLTSMLCFSSKGSSRSQTIGNSIVYTQAVAPVSTPTYRALSPA FT QTSSPTSTRMETPSTGVSFRSMEDLQEGDSRQPTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2755 BP; 695 A; 621 C; 664 G; 775 T; 0 other; accggatggc cgcgcgtccc ctcgtggtgt gggcccccca cgtgtagatg tcccccaatt 60 agaacgcgcc ttggaaggct agttatttgt ggtcccccta tatcaacttg ctcaccaagt 120 tgttcatcca cacaatgtgg gaccctctat tgaacgagtt cccagaatcc gtccacggtt 180 tccggtgtat gctcgccgtc aaataccttc agctggtaga aggtacatat tcaccagaca 240 ctctgggaca cgagttaatc agggatctca tatccgtcat cagggcgaag aattatgtcg 300 aagcgaccag cagatataat tatttctact ccaggctcga aggttcgtcg ccgtctgaac 360 ttcgacagcc catacagcag ccgtgctgct gcccccactg tccgcgtcac aaaaagacag 420 ctatgggcaa acaggcccat gaatcggaag cccaggtggt atcggatgta taggagccca 480 gatgttccta agggctgtga aggcccatgt aaggtccagt cattcgagtc gagacacgat 540 gtggtccata taggtaaggt catgtgcatc tctgatgtca ctcgtggaat tgggcttact 600 catcgggtgg gtaagagatt ttgtgttaag tccgtttaca tcctgggcaa gatatggatg 660 gatgaaaaca ttaagaccaa aaatcacacg aatagcgtaa tgttcttcct tgtaagggat 720 cgtaggcccg ttgataagcc tcaggatttt ggtgaagtat ttaatatgtt tgataatgag 780 cccagtacag ctactgtgaa gaacatgcat cgtgatcgct atcaagttct caggaagtgg 840 agtgccactg tcactggtgg tcagtatgcg agcaaggagc aggctttagt caggcgtttt 900 tttagggtta ataattatgt tgtgtataac cagcaagagg ctgggaaata tgagaaccat 960 actgagaatg cattaatgtt gtacatggcg tgtactcatg cctctaatcc tgtatacgct 1020 acgttgaaga ttagaatcta cttctatgat tcagtgagca attaataaat atttaatttt 1080 attaaattag actgctcaac acggtcagtc ccatggatta cattgtacaa tacatgctct 1140 acggcgttta caacagtatt aatacttata actcctaagc gatctaagta tttcaatact 1200 tgggtcttaa ataccctcaa gaaacgccag gtctgaggct gtaaggtcgt ccagaccttg 1260 aaatccatcc agcattggtg tagtcccaac gctctcctca ggttgtggtt gaaccgtatc 1320 tggacggtta ttatgtccca cggcatgctg aacggccggc tgtcgtgctg gatgatcttg 1380 aaatagaggg gatttggaac ctcccagata tagacgccat tcatcgcctg agctgcagtg 1440 atgagttccc ctgtgcgtga atccatggtt gtggcagttt atgtgcacgt agtacgagca 1500 cccgcagttg aggtctaccc tccgtcgccg gatggcctta cgcttagctg ctctgtgttg 1560 gaccttgatt ggaacctgag tagagcggct cgctgaggga gatgaaggtc gcattcttca 1620 gagcccaagc cttcaatgcg atattcttcg cctcgtcaag gaattcttta tagctggaat 1680 tgggcccagg attgcacagg aagatagtgg ggattccccc tttaatttga actggtttcc 1740 cgtacttggt gtttgactgc cagtcccttt gggcccccat gaattcctta aagtgcttta 1800 gataatgcgg atctacgtca tcaattacgt tgtaccatgc atcattgctg taaaccctag 1860 gactcaagtc cagatgtcca cacagatagt tgtgtggacc caatgaccta gcccacatcg 1920 ttttgcctgt acgactatcg ccctcgatga ctatactatt aggtctcaaa ggcctcgcag 1980 aggcacccat gacattctct gacacccact cctcaagttc atctggaact tggtcaaatg 2040 aagaggctga gaagggagac acatacacct cgggaggagg tgtaaaaatc ctatctaaat 2100 tagcatttag attatgaaat tgtaaaacat aatccttggg tgctaactcc ttaatgactc 2160 taagagcctc tggcttactg cctgtgttaa gtgctgcggc gtaagcgtcg ttggctgtct 2220 gctgtccccc tcttgcagat cttccatcga tctgaaactc accccagtcg atggtgtctc 2280 catccttgtc gatgtaggac ttgacgtctg agctggactt agcgctctgt atgttggggt 2340 ggaaactggt gctactgctt gggtgtacac aatcgaattg ccgattgttt gtgatcgtga 2400 gcttcccttc gaactgaagc agagcatgga ggtgaggttc cccattatga tggagttctc 2460 tgcaaatttt aataaatttg atgtttgtcg gaagactcaa gcttcggaag aagtcgagta 2520 agtgttcttt ggtgagagaa cacttagggt atgtgaggaa tatatttttg gactgaattc 2580 ggaatcgtgg gtttctcatc tttgactcgg tcaattggag acacccctga gcaagtctct 2640 agtgaattgg agacattata tattgtctcc aaatggcatt ctcgtaattc ccaaaagtta 2700 cattcaaatt tcaaattcga atttgaaatc caaaagcggc catccgtata atatt 2755 //