ID AJ314596; SV 2; linear; genomic DNA; STD; VRL; 7934 BP. XX AC AJ314596; XX DT 09-JUN-2001 (Rel. 68, Created) DT 31-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Rice tungro bacilliform virus complete genome, isolate West Bengal XX KW ORF P12; ORF P194; ORF P24; ORF P46. XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RC Revised by [3] RA Dasgupta I.; RT ; RL Submitted (19-MAY-2001) to the INSDC. RL Dasgupta I., Department of Plant Molecular Biology, Department of Plant RL Molecular Biology, University of Dehi South Campus, Benito Juarez Road, New RL Delhi 110 021, INDIA. XX RN [2] RX DOI; 10.1007/s00705-002-0801-y. RX PUBMED; 12111427. RA Nath N., Mathur S., Dasgupta I.; RT "Molecular analysis of two complete rice tungro bacilliform virus genomic RT sequences from India"; RL Arch. Virol. 147(6):1173-1187(2002). XX RN [3] RP 1-7934 RA Dasgupta I.; RT ; RL Submitted (26-JUL-2001) to the INSDC. RL Dasgupta I., Department of Plant Molecular Biology, Department of Plant RL Molecular Biology, University of Dehi South Campus, Benito Juarez Road, New RL Delhi 110 021, INDIA. XX DR MD5; 8023f49d3dd03258d7aa62e4132bdd9a. DR EuropePMC; PMC5747845; 29291233. XX FH Key Location/Qualifiers FH FT source 1..7934 FT /organism="Rice tungro bacilliform virus" FT /isolate="West Bengal" FT /mol_type="genomic DNA" FT /country="India:West Bengal" FT /db_xref="taxon:10654" FT CDS <98..670 FT /note="ORF P24" FT /db_xref="UniProtKB/TrEMBL:Q91DT5" FT /protein_id="CAC41319.1" FT /translation="IESRLEKLGFLDLAIWGSPKTQKYSLSTENIAFYCYFHKPENTST FT TGHNHTFHSDNKQLNTIVDLIVKHAEKTKNIKEELDNYSKLLEKILELKPTKKQIEKLL FT ENQNTINQNFDYIKEQNSQIEKSLRKTNKLEDSINTLLIEIQQARPKEVELRTLKIAEQ FT NSKAIEKFEKEIQDLREILEYLKHQST" FT CDS 667..1002 FT /note="ORF P12" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q91DT4" FT /protein_id="CAC41320.1" FT /translation="MSADYPTFKEALEKFKDLESETANKDKFGWVFTLQGIKTTADVNL FT ASKGLVQLYALQEIDKKINNLSAQVGKIPTTSGSSSSAGAIVPAGSNTQGQYKAPPKKG FT IKRKYPG" FT CDS 999..6023 FT /note="ORF P194" FT /db_xref="GOA:Q91DT3" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q91DT3" FT /protein_id="CAC41321.2" FT /translation="MSLRPFSGTSRTLTQDSASESNIKKGKSSTKRELIEEIDVAKEIE FT NFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEEAISVTTNAFITSLFPNEVIKN FT VKNQGKLYYHIGMMAIGIKGLHRKKIGTKVMVMFYDDSFGKAKEASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSIAIKTIGRLTTNIQARYKMNVKD FT IVEQISSQGITMVAPMEIDSSHLDGNEWNLSKFMTQEGTSRVPSKALIYQNLHGGESLR FT FSNYSQTKMHDPAEINSDEDEDLKILGEQLNVKMATFQEETLEQKLERIKEEKKQLLAK FT LEAKKKEIESKSLKMAVIEDDFNPNNEYLDDSYSELEDLEFEQLGLTGWEDLDQESLET FT EEITEWENPNQVLTREIKAFKSVSEQIEDIFGELLKEHGNYDMALKNLEERYDLKNLEG FT AKNLEEIAKASTSKMMDVKPVKRPKEEQTAYEDDMRDDWRRKELTTNPEVSSKDRNFER FT IGGSYKKNFYPSKSEILNLDHVPPQFYYDQIITWEGIVKNEWEARKKDGMDMWSWMDGR FT ITGMVLYLIQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEXPTDERRTALQRLAL FT RELEALNCEDPVKIQPFMAEYLKKAAEAKKGFDVIYVERLFDRLPEAVGKLIKKEFLDA FT GNSYEAGIGVAVSYISTWMRLKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKTLKRVT FT NYNRNKRKNYVRKPNIKRKCRCYICQDENHLANRCPRRYVNQARASMIEGLEEDIVSIA FT SDDEDYENFFEIIELEEFLSKSGQQDHEHTWETGGKKEKTCDICDYYTDFNKTIVCKTC FT EIQYCTTCANQLGIEVEKTYKKSREEELYDELRKTVVNLDLRLTIVEHKLEMNKLQEQF FT DSLQLSKEPSSSETIKALAMQAKESNFIKTNINRTAGCYVEVKLTFLNNSKITTALIDS FT GSTHNIICPLLVPEIWVKSLNLDIVMTTIDNSKYSLNRGLHDEVKIQFKEVDESFGIKY FT SLGQTYVAPKPTGTFIIGHRFMTSEHGSITIHKDYVTIQKTTGIYPTARHELKSEFARK FT HGGQRPLFSNIPETYNKIPKLYGYKSEIEDKNLLTLIKELEYLGYIGDDITKNKTNWVC FT DFKIINPDINITCNTIPYTPADKEVFEKQIKELLDNKLIRKASPTCRHRTAAFVVRNHS FT EEVAQKPRIVYNYKRLNDNMVTDPFNIPHKISMINLLQRARIFSKFDLKAGFHHMKLKE FT DFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDILIASSNE FT QEHIKHLKLFFTRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVEKIKKFD FT KSKLSTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKSGQRTFNKEDWNIIFKIER FT EVDKIKPLSRPEESDYIIIETDASEEGWGAVLICKPDKYASKDTEKIAGYASGNFGEKK FT TWTSLDYEIEAINEALNKFQIYLDRDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDN FT LLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNTTSTIESSDSRSSTIESSDSQS FT SIKESLDSWTPTKESSDSSCRIKLHPLSSRQKVKGE" FT CDS <6047..7213 FT /note="ORF P46" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:Q91DT2" FT /protein_id="CAC45068.1" FT /translation="INKECPYSIHHLGKNRVPIYKQGNLFHSEFTGRLSHLSNGLIDHL FT FTFSDNTERVRKLHLISEHIYNKEFEIQTYSLECEKLREQVSHLKXTVETQKQQLREMR FT DKLEGLREPLKKPIYTTQDKEALRNFFCKERSMEYIYHHIKRLARESYYSHLNKLQKDM FT EFLRGFYLSFLTNVKFLVLFETGLWTTENIESHFFNNSSLFITQEEGERQMTKGLLEKN FT SEDEAGRYILTSGFVSDLYAHGFIKQINFTNKLPEGIPLVIREKIMQYKFPGANTILIE FT KEIPKWDFDLMKRSTTFRTQIYILQGHRNFYGFSPIKSYEPITPEEFGIEYYSWEQIYE FT DDEADVVYQSISTRISKVVREYAWPCDDSDIMSCTTSMEEEYAHRLEA" XX SQ Sequence 7934 BP; 3216 A; 1279 C; 1437 G; 2000 T; 2 other; tggtatcaga gcgatgttcg aactttaagg gaaattttga tacaaactta tacatacatt 60 tacatatgtt ctgaagaggg atcttacttt ctcaaatatt gagtcacgtc ttgaaaaact 120 tggatttcta gatttagcaa tttggggatc accaaaaaca caaaaatata gtctatctac 180 tgaaaatata gccttttatt gttactttca taagcctgaa aacacatcca ctactggaca 240 taatcacacc tttcattctg ataacaagca acttaatact atcgtagatt taatagttaa 300 gcacgcagaa aaaaccaaaa atattaagga agaactagat aactatagta agttactaga 360 aaagatctta gaactaaagc ctactaagaa gcaaatagaa aaacttttgg aaaaccaaaa 420 caccataaac cagaactttg attatatcaa agagcaaaac tctcaaattg aaaaatcttt 480 gagaaaaacg aataaattag aagactctat aaacaccttg cttatagaaa tacagcaagc 540 tagacctaaa gaagtagaac ttcgtactct taaaatagca gaacaaaact ctaaagctat 600 agaaaaattt gaaaaagaaa tacaagatct aagagaaatc ttagaatatc ttaagcacca 660 atctacatga gtgctgatta tcctaccttt aaggaagcct tagaaaaatt taaggattta 720 gagtctgaaa cagcaaacaa agataagttt ggctgggttt ttactcttca agggataaaa 780 acaacagcag acgtaaatct agcatctaaa ggactagtac aactttacgc tttacaagaa 840 atcgataaga aaataaataa tttatctgca caagttggta aaatacctac aactagtggt 900 agcagtagtt cagcaggagc catagtacct gcaggaagta atacccaagg tcagtataaa 960 gcaccaccta agaagggaat taaaagaaag tatccaggat gagtcttaga ccgtttagcg 1020 gtacctctag aactctaact caagattcag ctagtgaatc taatattaaa aaaggaaaat 1080 cttcaacaaa aagagaatta atagaagaaa tagatgttgc taaggaaata gaaaactttg 1140 attggaataa attatctggt ataaaatcaa ataaacttta tgagaaaaat tggcaagaaa 1200 aagccaaatt aaaacaacaa tcaataattt ctgcatataa agaagaagct attagtgtca 1260 cgactaatgc cttcattact tcattattcc ctaatgaagt cataaaaaat gttaagaatc 1320 aaggaaaact ttattatcat ataggcatga tggccatagg aattaaggga ttacatagaa 1380 agaaaattgg cactaaagta atggtaatgt tttatgatga tagctttggg aaagccaaag 1440 aagctagtat aggatcaata gaaatggata tgaatgcagg ttgcggagta ttttactctt 1500 gccctgactt cgctaaatat ataaaagacc tatcccatct caagatagga attcagaccc 1560 taggatatga aaattatgaa ggaaaaaatc tttccatagc cataaaaact ataggaagat 1620 taacaacaaa tatccaggct agatataaaa tgaatgtcaa agatatagtt gaacaaatat 1680 catcccaagg aataactatg gtagcaccca tggaaataga ttcatcacat ttagatggga 1740 atgaatggaa tttaagtaaa tttatgactc aggaaggaac aagtagagtt cctagtaaag 1800 ccttaatata tcaaaacttg catggaggag aatcacttag attttcaaat tattcacaaa 1860 ccaaaatgca cgatccagca gaaataaatt ctgatgaaga tgaagattta aaaattttag 1920 gagaacaatt gaatgttaaa atggcaactt ttcaagaaga aaccctagaa caaaaattag 1980 aacgaataaa agaagaaaag aaacaacttc tagcaaagtt agaagctaaa aagaaagaaa 2040 ttgaatcaaa atctttaaaa atggcagtca tagaagatga ctttaaccca aacaacgaat 2100 atctagatga ttcatactct gaattagaag atctagaatt cgaacaatta ggattaactg 2160 gttgggaaga cctagatcaa gaaagtctag aaacagaaga aatcactgaa tgggaaaacc 2220 caaaccaagt cctaactaga gaaataaaag cttttaaatc agtctccgaa caaatagaag 2280 atatatttgg agaattatta aaagaacatg gaaattatga tatggccctt aaaaatctag 2340 aagaaagata tgatttaaaa aacctagaag gagccaaaaa cttagaggaa atagctaaag 2400 catccacatc aaaaatgatg gatgtaaaac cagtgaaaag accaaaagaa gaacagacag 2460 catacgaaga tgatatgaga gatgattgga gaagaaaaga attaacaacc aatccagaag 2520 tgtcctcaaa agatagaaac tttgaaagaa taggaggatc atataagaaa aacttttacc 2580 ccagtaaaag tgaaatccta aacttagacc atgtaccccc acagttctac tatgaccaaa 2640 tcataacttg ggaaggaata gtaaaaaacg aatgggaagc aagaaaaaag gatggtatgg 2700 acatgtggtc ttggatggat ggaagaataa caggaatggt tttatatcta atacaagatt 2760 ggatatctaa aaaccaagcc gcttacaatg atataaaatc tcgaggagat agaccagaaa 2820 atttcgtgaa aatggtaaaa gataggttct tgatagaagn ccctacagat gaacgaagaa 2880 cagccttaca aagattagct ctaagagaat tagaagcttt aaattgtgag gatccagtta 2940 agattcagcc atttatggca gaatacctta agaaagctgc cgaagctaaa aaaggattcg 3000 atgtcatata tgtcgaaaga ctatttgaca gacttcctga ggcagtagga aaactaataa 3060 aaaaggaatt tctagacgca ggaaattcat atgaagcagg cataggagta gctgtttcat 3120 acatatccac atggatgaga ttaaaatgca taaaagaaac agaagctaaa acacaaaaga 3180 aagcatcatt agcattctgt cgatctatat atactatagg agattataag aaaagaaaaa 3240 cactaaaacg tgttacgaac tataatagaa acaaaaggaa gaattatgtt agaaaaccca 3300 acataaaaag aaagtgtaga tgttatattt gccaggatga aaaccaccta gcaaatagat 3360 gtcctagaag atatgtcaat caagccagag caagcatgat tgagggatta gaagaagata 3420 tagtttccat agcttcagat gatgaagact atgagaactt ctttgaaata attgaactag 3480 aagagttttt aagtaaatca ggacaacaag atcacgagca cacctgggaa acaggaggta 3540 agaaagaaaa aacttgtgat atttgtgatt attatactga tttcaacaaa accatagtat 3600 gcaaaacatg tgaaatacaa tattgtacta cttgtgctaa tcaacttggt atagaagtag 3660 aaaaaacata taaaaaatct agagaagaag agttatatga tgaactaaga aaaacagttg 3720 tcaatctaga tctaagattg acaatagttg aacataaact agaaatgaat aaattacaag 3780 aacaatttga ttccttgcaa ttatctaaag aacctagttc ttcagaaacc ataaaagctt 3840 tagctatgca agcaaaagaa tcaaatttca taaaaacaaa cataaataga acagcaggtt 3900 gttatgtaga agttaaacta accttcctaa ataactcaaa aataaccact gcattaatag 3960 attcaggttc tacacacaat attatctgtc cattattggt accagaaata tgggttaaaa 4020 gcctgaactt agatattgtt atgaccacaa tagacaacag taaatatagc ctcaacagag 4080 gactacatga tgaagtaaaa atacaattta aagaagtcga tgaaagtttt gggataaaat 4140 acagtttggg acaaacatat gttgccccta aaccaactgg aactttcata attggacata 4200 gatttatgac cagtgaacat ggtagtatta caattcataa agactatgtt acaatccaaa 4260 aaaccacggg aatctacccc actgctcgtc atgaactcaa atcagagttt gcgcgaaagc 4320 atggtggaca aagaccccta ttttcaaaca ttccagaaac ctacaacaaa attccaaaat 4380 tatacgggta taagagtgaa atagaagata aaaatttact tactcttatt aaagaactag 4440 aatatttggg atatatcgga gacgatataa caaaaaataa aactaattgg gtatgtgact 4500 tcaaaatcat taacccagat ataaatatca cttgcaacac aatcccatat accccagcag 4560 ataaagaagt ctttgaaaaa caaatcaaag aactgttaga taacaagtta ataaggaaag 4620 caagtcctac ttgcagacat agaactgcag catttgtagt aagaaaccac tctgaagaag 4680 tagcacaaaa accaagaata gtttataact acaaaagatt aaatgataat atggttacag 4740 atccttttaa tatcccacat aagatttcta tgataaatct attacaaaga gctaggatat 4800 tctctaaatt tgatttgaaa gcaggatttc atcatatgaa acttaaagaa gattttaaag 4860 attggacaac ttttacttgt tctgaaggat tatatacttg gaatgtctgt ccatttggta 4920 tagctaacgc tccatgtgca tttcaaagat ttatgcagga atcctttgga gatttaaagt 4980 ttgcattatt atacatagat gacatcctaa ttgcatcaag taatgaacaa gagcatatta 5040 agcaccttaa gttattcttt actagagtta aggaagtagg ttgtgtcctt agcaagaaaa 5100 aatcaaaaat gttcctaaaa gaagtggaat acttaggagt ggagataaag gaaggaaaga 5160 ttagcctaca accacacata gtggaaaaga taaagaagtt tgataagagc aagttgagta 5220 ccctaaaggg attacaggca tatctaggcc tactcaatta tgctagagga tacattaaag 5280 acctatcaaa gttggtagga ccactatata aaaagactgg caagagtggc caacgaacct 5340 ttaataaaga agattggaat ataatcttta agatagaaag agaagttgat aagattaaac 5400 ctttaagtag accagaagaa tctgactaca taataataga gacagatgca tcagaagaag 5460 gatggggagc agtcttaatt tgcaaacctg ataaatatgc tagcaaagat actgaaaaga 5520 tagcaggtta tgcatcagga aactttggag aaaagaagac ttggactagt ttagattatg 5580 agatcgaagc tataaacgaa gcattaaata agtttcagat atatttggat agagacttta 5640 caattagaac agattgtgag gcaatagtca aaggcataaa aacagaagat tacaaaaaga 5700 gatccaagac aagatggatc aaactgagag ataatcttct taaagatgga tacaagccta 5760 cctttgagca tatcaaagga aacaaaaact ttttgccaaa cttcctatcc cgcgagggag 5820 attttatttt aaaatgtctt caaaacacga cttcaactat agaatcttcg gattcacgat 5880 cttcaactat agaatcttcg gattcacagt cttcaattaa agaatcttta gattcatgga 5940 ctccaactaa agaatcttcg gattcatctt gcaggataaa acttcatcct ctgtcttcaa 6000 ggcagaaggt gaaaggcgag taatcgctaa agtacacggt gtttccatca ataaagagtg 6060 cccatactca atccaccacc tcggtaaaaa ccgagtcccc atatataaac agggaaacct 6120 gtttcacagt gagtttactg gtaggcttag ccacttatca aacggtctta tagatcatct 6180 ttttacattt tcagataata ctgagcgagt taggaagctc caccttatat cagagcatat 6240 ctacaataaa gaatttgaaa tacagaccta tagtcttgag tgtgagaaat taagagagca 6300 ggttagccac ttaaaanata ctgttgaaac acaaaaacaa cagttaagag agatgagaga 6360 taaactagag ggactgagag agccactcaa aaagcctata tacacaaccc aggataagga 6420 agcacttcgt aacttctttt gcaaagaaag aagtatggag tacatttatc accacataaa 6480 gaggttagct cgagagagct attattcaca tctgaataaa cttcagaagg atatggaatt 6540 cctcagggga ttctacttat ctttcttaac gaacgtcaag tttctagttc tctttgagac 6600 tggactctgg acaactgaaa atatcgaaag tcacttcttc aacaatagca gtctcttcat 6660 aacccaggaa gaaggagaaa ggcagatgac aaaaggattg ctagaaaaga acagtgaaga 6720 tgaagctgga agatacattc tgacatcagg atttgtgtct gacctatacg cccatggatt 6780 cataaaacag ataaacttca ctaataagct cccagaaggc attccattag tcataagaga 6840 aaaaataatg cagtataagt tcccaggagc aaatactatc ttaattgaga aagaaatccc 6900 aaaatgggac tttgatctca tgaaaagaag cacaacattc agaactcaga tttacattct 6960 ccaaggtcat agaaactttt atggattttc acccataaaa tcctatgaac ccattacacc 7020 cgaagagttc ggaatagaat attacagctg ggaacaaatc tatgaagatg acgaagcaga 7080 cgttgtctat caatcaataa gcaccagaat ctccaaagtt gtaagggagt atgcttggcc 7140 atgtgatgac agcgacatca tgtcctgcac cacctcaatg gaagaagaat atgcccacag 7200 gctggaggca taaagagatg atccaaagat aaaggaacaa agcagcaaag catcaataaa 7260 agaagactga agacataaag ggggaatcca ctttaaatta ttgtacctct acaattattg 7320 taagagtgtg taaaatctag cctacccctg aacactccta tataaggaga agtagtctgc 7380 atgtaatagg cattcgaaat ccacacaccc agagtagcac acacttccac aagagcaaga 7440 gaagagctga tcttctcacc tcctcttcaa agaaggatta gctgcaatgg ctcaggtcag 7500 tgagtagtcg tctttaaggt tcctctagga acctctgtgt catatgtatt gtatcatgtt 7560 tgtatcatca agaacttatc cgctgcatga ataaagctct atattgttgt ttacactcct 7620 tagataagat atgaagccat acccgtttct taaatcaata gttctaagat aattctagca 7680 tgaaaaaggg ggctaaaggg ggaagaagta ccgtcagggc gtgtgatgcc aagggaacaa 7740 gtaccatgaa taccctaata agtgctagag ggaagataag aactaacgaa ataaggaaca 7800 tttggtagct ggtttcttat tatcattatc aagtagctct tcctcatcac gaaaactgca 7860 aaggcctgcc aaccctaggc tgaaacagtg actaggccga ggaattgcga aaagataggg 7920 ggggtgccta catc 7934 //