ID AJ311876; SV 1; linear; genomic RNA; STD; VRL; 5619 BP. XX AC AJ311876; XX DT 08-JAN-2002 (Rel. 70, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 2) XX DE Strawberry mottle virus RNA2 gene for polyprotein, genomic RNA XX KW polyprotein; RNA2 gene. XX OS Strawberry mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-5619 RA Thompson J.R.; RT ; RL Submitted (17-JUL-2001) to the INSDC. RL Thompson J.R., Virology, Biologische Bundesanstalt, Scwabenheimer Strasse RL 101, Dossenheim, D-69221, GERMANY. XX RN [2] RX PUBMED; 11752720. RA Thompson J.R., Leone G., Lindner J.L., Jelkmann W., Schoen C.D.; RT "Characterization and complete nucleotide sequence of Strawberry mottle RT virus: a tentative member of a new family of bipartite plant picorna-like RT viruses"; RL J. Gen. Virol. 83(Pt 1):229-239(2002). XX DR MD5; 43f7535fefed7a47f5bf51835b070eef. DR BioSample; SAMEA3283059. XX CC Related sequence: AJ311875. XX FH Key Location/Qualifiers FH FT source 1..5619 FT /organism="Strawberry mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:167161" FT CDS 103..4461 FT /transl_table=1 FT /gene="RNA2" FT /product="polyprotein" FT /note="contains putative movement and coat proteins" FT /db_xref="GOA:Q8UYV8" FT /db_xref="UniProtKB/TrEMBL:Q8UYV8" FT /protein_id="CAC86397.1" FT /translation="MFLFVLYACLILYTLFVGFHFFHPRACAWVKRSVTGREENLDFIL FT KARYINREEFFVCVSTIIIWIVLRHCWTFLSHVVLVVLPKIFSFVLSSTKMASRDIQEA FT YHKAAKEFNSGASSIGMAIEHAKSKNWEVAPDKCEKAIKELLKKDSLYTTHGVKTLLHI FT KKIPKTVVGHFDTGFVPAVNTTNSKQPSISPIPLTPYVSKHVSRIEAAKSKFTQGVGGH FT ISGYIPRPPSAIITISVVSLKSKSLVSQSNAGITLVLGLDGRAQEPQDAILGGHLHFAK FT DSNLATSLFFPNLSLTSEEEKLDSCVQVWTSAQGYNLTSGFASSTNISMIGEVSADAVA FT TSMLVPMRQHIEARKFETLCHGGLPIHPYRATENKIDTVELDWTSTSTSMEFDSSVDGV FT SLWKPSRTNGTTSLRFTGLKMNSVKEDEELHFSDIDEGFNPPNPRERTRAYEEGLPEDI FT AETQDLLDGQERLIGEACVLSRTFTLPDVVDNCQLIGVINLFEDTDVANSGEPLLANLR FT TATIFIPRIQVRVRYSLPSAYNCPVIVTWDEARCIVEVTDTIDLTQLPHIIVTPNKSMQ FT ESSMDLSLNGITGTYSLARVISRRAGNLLVSCTKHDFAEMVGEASVTIEAWLMPGTVIG FT KGIKRRPAPERPILNLDLVENYHTPLLEGPTDLGSVILDSNTERYKCFSLFVKPGVGAV FT TDDRMTTKGSTISSVCSHWAMWSGTAVVGVSISARSSVAGQMTVYTVPTGTFVHDINRS FT VCNQWERRIIKFNGSDHHEITSSANSWLGGCSTMGEAFMGSKDQNGSCMMFVIFIDDPP FT TSCAGYDSSVQVFFSLKRLENLNLFERITPQIYRASQPSKALVQRKPWVERVVKTAPTG FT AVEQNFGVQPTIFYRMYTIRNIKRDKPVTWILPFSIAEPLRSNWKNCKVTNYEHLEKGK FT DEEPLLIIDTTNPYRLLTQGFCYFSGEMQASVSVTSTKKKAGSLVVGRFKSPYFTKEIG FT CGQKDADIFGGGLMETASLLPGNVVYLTQPARPFVRSSCRPDVEKSHQATLDVPSYICI FT IVPANSDITEIEVGFNMNGPMELFGHALPQPVDLPKSQTHGYLPALTVLDVKPAFPFGW FT WDMVNERAIKLLSRQMTPSLDVAKLKTSRGPMKDDIFRMYHVFEMAGIAEKSHFVSFLR FT PNFTPHQGYAINLQIWVGDSRDKMFEVIWRFDSSMPQGYITTYVTDGNYEGWNLNTCWK FT ADFDRFKSRERFNLSYTRDKGRIYLFDHNNVIGYIKDFKPTLHCVFGWEYQLDTNVIRV FT PNQYQPYSFNPSGGYVRPEMDAMEQKPHLLHIQHTNFQSNTHLYDRCVNYDHSKGPVRF FT SDCGGFDPSLINPAVEQSDRGSLQKGEEIDDTVDHGPTELLLSDVNSGVPQVPLHAKIS FT TGDSSQGESEGPIDYESRREPVERNRVGISNRKKHRRGRPKPNHPGALGQ" XX SQ Sequence 5619 BP; 1431 A; 1279 C; 1321 G; 1588 T; 0 other; ttaaagcgca ctggacccag ctcactgaaa aaatttgaac ttttctttta atttggttac 60 atcacttatc gaactcatgc ctgttctatt ctgtcaaggc ttatgttttt gtttgtgttg 120 tacgcttgct tgatcctcta cactctcttc gttggatttc acttcttcca tccgagggcg 180 tgtgcttggg ttaagcgtag tgtcacaggg cgcgaggaaa atcttgactt tatcttaaag 240 gcaagataca tcaatcgcga ggaatttttc gtttgcgttt caactatcat tatttggatt 300 gtccttcgtc actgctggac ttttctctcc catgtcgttt tagtcgtcct accaaaaatt 360 ttttcctttg ttctatcttc aactaagatg gccagtcgag atatccagga ggcctaccac 420 aaggccgcca aggagttcaa ctctggcgct tccagtatag gaatggctat tgaacatgcc 480 aagtccaaaa actgggaggt ggcaccggat aagtgcgaga aggctatcaa ggagcttctc 540 aagaaagata gcttatatac gacccatggg gtcaaaacct tgttgcacat caagaaaata 600 cccaagactg ttgtgggtca ttttgataca ggttttgttc ccgctgttaa taccaccaac 660 tccaaacagc cctcaatatc acccattcct ttgacacctt atgtgtcgaa acatgtttca 720 agaattgagg ccgcaaaatc caaatttact cagggcgttg gaggccatat ctccggatat 780 atcccccgac caccgagtgc cataatcacc atcagcgtgg tttccctcaa atccaaatct 840 ttagtttccc aatccaatgc cggtataaca cttgtgttgg gtttggatgg gcgagcacag 900 gaacctcagg acgctattct cggtggacac ttgcactttg ctaaggattc caaccttgct 960 acttctttgt ttttcccgaa cttgtcttta acatctgaag aggaaaaact ggattcctgt 1020 gttcaagtat ggacttctgc tcagggctat aatttaacta gtggtttcgc ttcctccaca 1080 aacatatcca tgattggaga agtttctgcg gacgccgttg ccacttccat gttggtccct 1140 atgagacaac acattgaggc aaggaagttt gaaacattgt gccacggtgg tctcccaatc 1200 catccctacc gtgcgacgga aaataaaatt gacactgttg aattggattg gacttcaact 1260 tccacatcca tggaatttga ttctagtgtc gatggtgtta gcctgtggaa accctcacgc 1320 accaatggaa cgacttcact gcgtttcaca ggtctcaaaa tgaactctgt caaggaggat 1380 gaggaactgc atttcagcga tattgatgaa ggttttaatc ccccaaatcc gcgtgaaaga 1440 acccgagctt atgaagaagg tttgcccgaa gatatcgcgg aaacccagga tttgcttgat 1500 ggacaggaaa gactcattgg tgaggcgtgt gttctatcta ggacattcac tcttcccgat 1560 gttgttgata attgtcaatt gatcggtgtt atcaatctct ttgaggatac tgatgttgct 1620 aattcggggg aaccattgct agccaatcta cgcactgcca caatttttat accaagaatc 1680 caagtgcgtg tgcggtattc gcttccgtca gcctacaatt gtccggtcat tgttacttgg 1740 gacgaggctc gctgtattgt tgaggttact gacacaattg atctcaccca actccctcac 1800 attatagtga ccccaaacaa gagcatgcag gaatcctcca tggatctctc tttgaatgga 1860 atcacaggaa cttactccct tgctagggtg atttcgaggc gtgcgggaaa tctcctcgtc 1920 tcatgcacca aacatgattt tgccgaaatg gttggcgaag catcggttac catcgaggct 1980 tggttgatgc cgggtactgt catagggaaa ggtattaaac gacgccctgc tccagaaagg 2040 cccatcctta acctggatct tgttgaaaat taccacacac cacttctgga gggacctacg 2100 gatcttggaa gtgtcatttt ggactccaac acggagcggt acaaatgttt ttctctcttc 2160 gtgaaacccg gtgttggagc agttactgat gataggatga ccactaaagg ttcgactatc 2220 tccagtgtct gttcccactg ggcaatgtgg tcgggtactg ctgtcgttgg ggtctccatt 2280 tcagccagga gtagtgttgc gggccaaatg accgtgtata cggtacccac tgggactttt 2340 gttcatgata tcaaccgctc agtctgcaac caatgggagc ggcgaatcat caaatttaat 2400 gggtctgatc accacgagat aacctcttct gccaattctt ggttgggtgg ttgttctacc 2460 atgggagaag ctttcatggg ttcaaaggat cagaatggga gctgtatgat gttcgtgatt 2520 ttcatagatg atcctccgac aagttgtgcg ggttatgatt ccagcgttca agttttcttc 2580 tctctcaaga gacttgagaa cttgaatctc ttcgagcgca tcacaccgca gatttatcgt 2640 gccagccagc cttctaaggc gcttgtacag cggaagccct gggtggaacg tgtagtcaag 2700 accgctccga caggtgctgt tgagcaaaac tttggtgttc aacccaccat cttttaccgc 2760 atgtacacca taaggaatat taagagagac aagcccgtta cctggatctt acccttctct 2820 attgctgaac cgcttcgttc gaactggaaa aattgcaagg tgacgaacta tgagcacctg 2880 gagaaaggta aggatgaaga accccttctc ataattgata ccaccaatcc ttatcgctta 2940 ttgacgcagg gtttttgcta cttctcgggg gaaatgcaag cttcagtgag tgtcacctcc 3000 actaagaaga aggcgggttc cttggttgtt ggaaggttta agagtcccta tttcacaaaa 3060 gagatagggt gtggtcagaa ggatgctgat atctttggtg gtgggcttat ggaaaccgct 3120 tctttgttgc cgggcaatgt cgtctatttg acacagccgg ccagaccgtt tgtgcgctcc 3180 agttgtcggc ccgacgttga aaaatcccac caagctactc tggacgtccc atcttacatt 3240 tgtattatag tcccggcaaa ttctgacatc acggagattg aggtaggctt caatatgaat 3300 ggacctatgg aactctttgg ccacgctctt cctcaacccg tggatttgcc caagagtcaa 3360 acccatggtt atttgccggc tctcactgtt ctggatgtga aacccgcctt cccttttggg 3420 tggtgggaca tggttaacga gagggctata aaactcttga gtcgccaaat gacgccttct 3480 ctggacgttg cgaagctcaa aacatcacga gggcctatga aggatgacat ctttaggatg 3540 taccatgttt ttgaaatggc aggaatagct gagaagagcc atttcgtgag tttcttgaga 3600 cccaacttca cacctcatca agggtatgcc atcaacctcc aaatatgggt tggagattca 3660 cgggacaaaa tgtttgaggt tatttggcgt ttcgattctt ccatgcccca aggatacatt 3720 accacgtatg taacagatgg caactacgag ggttggaatt tgaacacgtg ttggaaagct 3780 gattttgatc ggttcaaaag ccgtgagcgt tttaatctga gttataccag ggacaaaggc 3840 cgcatatacc tctttgatca caataatgtc attgggtaca tcaaggattt caagccaacc 3900 cttcactgtg tctttggctg ggaatatcaa cttgacacga acgtcattag agtacccaac 3960 cagtatcaac cttactcttt caacccttcg ggcgggtatg ttagaccaga aatggacgct 4020 atggagcaga aaccccactt attacacatt cagcacacca actttcaaag taacacacat 4080 ctttatgatc gttgtgtgaa ttatgaccat tccaagggtc ctgtccggtt cagtgattgt 4140 ggtggttttg atccgagcct aatcaacccg gccgttgagc agagtgatcg aggtagtctc 4200 cagaaagggg aagaaattga tgatacagtt gatcatgggc ctactgagct tctattgtcc 4260 gatgttaatt caggtgtccc acaagtaccc ctacatgcca agatttctac cggggattct 4320 tcccaaggag aaagcgaggg gcccattgat tacgagtcta gaagagagcc cgttgagagg 4380 aacagggttg gaatctctaa tcgaaagaag cacagaagag gtagaccaaa gcccaaccat 4440 cctggcgccc ttggtcagtg atttctcttc ccttgtttct tcttttgggt ccgtctgcct 4500 cgtcaaagca ggctttctaa gggagaatgt atgtgggatt acctgacttt aattagttgg 4560 gcccatttgt gtaggaagga acttaattgt cttgaccatc ccgctaccat ccgtgataac 4620 acggttcagg gaaacctggt agtcccgtga attgacacgg aacagcttct cacgccgctg 4680 tataattaag gttcgtgagc ccattcccgg ttcgaaggaa tagggttgtt ggttcccata 4740 accatccagt aagcgaccac gactgtgaca aagggtcttt taatttacat gttgtagttt 4800 agtgacaatc caagcggaaa gacgctgggc gccgacagtt ctctatgtag gacaccggct 4860 cttggtagtt gggtgtaata acccttcttt gcccctaagt gggatgccaa ggaacactgt 4920 aaacagtgcc tcctgttagc gagatcaggt gacgatccaa gcccaaagag gctggtggtg 4980 tattcttcac taaggcgttg gagtcttggg aacccccata ttggtcatta cggtgaaaga 5040 taacacgtga atattctttc atctgtgctg gtatggtggg gggcgtgatc cctttacttg 5100 aaacacatgg aataggttct gtggtgcctt gaaccacaac ccagtccatc atgacattaa 5160 actgtttgga gatgtctctg ccataagtga gactaggacg tgaaccgaat ttcaccaacc 5220 ctcatggagg gaaagctgtg atggtggagt agtgacccac ttcagccggg ttatcaattg 5280 tttttcttct agtggtgacg tactagagta acctgaggtt cgcccgatca gtgaaaggct 5340 ttgtggacac tcctaaagat gtgtcagttt caccatgggg aggcttgatg agcccatgga 5400 atcctacctg aagattataa ctcaggcttg gtcactctgg aaccaataaa attctggaga 5460 ccgctctgat ggtgagcttt gttttaccat tcgtattgct gacgttacag caccaaaaat 5520 agtagtttta gataaaagtc tttaaattta actagcattt aatgtcgacg agtttcggca 5580 ttctaactgt agacttaact ttagatagat gtaaatatg 5619 //