ID AJ311875; SV 1; linear; genomic RNA; STD; VRL; 7036 BP. XX AC AJ311875; XX DT 08-JAN-2002 (Rel. 70, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 2) XX DE Strawberry mottle virus RNA1 gene for polyprotein, genomic RNA XX KW helicase; polyprotein; protease; putative protein cofactor; KW RNA dependent RNA polymerase; RNA1 gene; VPg. XX OS Strawberry mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-7036 RA Thompson J.R.; RT ; RL Submitted (17-JUL-2001) to the INSDC. RL Thompson J.R., Virology, Biologische Bundesanstalt, Scwabenheimer Strasse RL 101, Dossenheim, D-69221, GERMANY. XX RN [2] RX PUBMED; 11752720. RA Thompson J.R., Leone G., Lindner J.L., Jelkmann W., Schoen C.D.; RT "Characterization and complete nucleotide sequence of Strawberry mottle RT virus: a tentative member of a new family of bipartite plant picorna-like RT viruses"; RL J. Gen. Virol. 83(Pt 1):229-239(2002). XX DR MD5; 4a6a54f48d481522136f6978c1df4217. DR BioSample; SAMEA3283059. DR EuropePMC; PMC2861173; 20229114. XX CC Related sequence: AJ311876. XX FH Key Location/Qualifiers FH FT source 1..7036 FT /organism="Strawberry mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:167161" FT CDS 154..5901 FT /transl_table=1 FT /gene="RNA1" FT /product="polyprotein" FT /db_xref="GOA:Q8UYV9" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR018247" FT /db_xref="UniProtKB/TrEMBL:Q8UYV9" FT /protein_id="CAC86396.1" FT /translation="MGYLCDDVALWIKTFTDLGMPLDMAMEVYMNTKINDLRKCPVTYS FT ACFTYKDWVDEHFITQAPIDDDYVPTEVFPDEPPVSQVLPEHPKAGADIALVDIVADQL FT YSSPIFPLTEVKCRALASRDTNQLSRLADAVTAVTVAQCVEQGGTSVGGIQEAITSRIK FT RSFGWVGKAVESVNNMASATNLLNKIFERILSSFDFIAQTVNLFSDFLKGMKEKIAEMC FT LKTWEKLAEWGEHFYYVIPMFCSIFLIATTCFLINKFLAVVAPTYCFSSSSIVQLIVVG FT CAIVGCKEMGAALLALSSAGKKSFLDLIYETFGVDTSEHCDELPKDENAIPTPADWSQF FT ENCPAFEQSSTSMTGFFGILGLLTFFAPRGMKCDLYEMTKWAHGLKGLADGYEKFKSIT FT EKLAFWVYERIGLDTTWDAPAIQSMIPVTGIRFQDWCTEVEKLNIDMLNYTNLQDDLTR FT ARRLKEQGDKIQTHMMYSSESISFMMREKLRASMTTIPTIIAKFEKAVDISGTRMCPFT FT VLFHGPAGSGKSNSMRGFMHDVMNEMEEPSVGRVYPRNSGDKHWSDYLRQTALYYDEFA FT QKKPCNGESDELELIPLVSCSHFPLVGAAIEDKGLSFNSKYIFMCSNRADVSSNAGLAD FT NDAFRRRRHLCVEVTRDDREFDPSNPTYNQTFQLKNPLKPTENLKFSHEGGPLEEIGPM FT SYNELVVYAVNRAREHFDREVKAMKYAVSRATNTGKAHEQAIFYCPRFTCERMKLDTHA FT CPHLANEHFVDHEVYGEFRGEYFCCDKNGVACDCPLTNWEKSIMHDMSANATNDEIALA FT LALFSQEENRLMSDYAGFFELIENVDSWRVDAPPKAKKVDLQAYVNRTWADYNDRLRYL FT ICQHFERTKAARNTYFQRLKTLKDDIKSWSIVGAWNSLPMGAKWVVGIIALFSFGASLI FT WLLSKVMAMHTWDPMEMLGVFLGSKSFVEVVTEQGGYAESGSNTQAPIYRHKRVRAYEQ FT GFANSSQVLDLNDSEKIESIKKAQGVLVFSKNDGKSSTAAVTIFKDHQFLITTHELALL FT NFSKGCILTTRSGSSYSIYINANDVRTGSKGGIKDPISVVKVSTYFEMAKACTGSVIFD FT FGTFCEGHHDGIVVPNAQKVLDQTVHKTAFSRRHEVIDVHNMKGRVVWQANNLLAAPLY FT HQVGHCGRLLLARDEAKCLKIVGIHVAGVVIQEKHISLFSEINGMHKTAEMAVQQGMEV FT DILELVEPEVKTDMVIKIGHVAQGQQFRPATKTSIVKSQIHDTLWRAPETEPTVISPVD FT PRVPYAFDPYTAGIMKFEKEVGPLDFSDPDTPESTVIEDISEELLREKKSLGGFALDTV FT CSNEVAINGVDSVPYAERLVMSTSEGYPFVLSRKAQDTGKFRFFDKDGDRWVAKDEVLD FT DLKELEEAIKSDDFKGGIITIACAKDEKTKMKRVREVPKTRIFEILPFHYNILVRKYYL FT FFMQFIMSLHDFLPCKVGLNVYSKSWDTMHAEHNRFAYHFNGDYTGFDTATPRVLMMKI FT ADMVSNLAGDGRENAIVRRNLMKMAVERRILVLRDLYQVKGGTPSGFALTVIINSVVNQ FT FYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAELK FT TIGVNLSDGKKTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSSE FT DSVETLDDNCYSALMEAFHHGRDYFNFLRARIQDAYDKAGLYQPHLLHFNEAQAIWLEQ FT HSIAPPNDYLDGIKKEVLPLTAGRDVMRTITTTIDATSVKGYNKAHKEQSYHRTKVFLN FT PLATEITWLRSGQAAHLDVPAKLHRRNFEGIAIKVANLLKGENCCIVEGTCGINSFALA FT LAIGFLRKELTGVGCVNLLASYSSNDASYYTGLAMLTTVVG" FT mat_peptide 154..1548 FT /product="putative protein cofactor" FT mat_peptide 1549..3045 FT /product="helicase" FT mat_peptide 3046..3120 FT /product="VPg" FT mat_peptide 3121..3816 FT /product="protease" FT mat_peptide 3817..5898 FT /product="RNA dependent RNA polymerase" XX SQ Sequence 7036 BP; 1844 A; 1500 C; 1663 G; 2029 T; 0 other; ttaaagcgca ctggacccag ctcactgaaa aaatttcaat ttcgtactga tcctttctca 60 cttttgaacc ccccctctcc ttgctttaca aatcactggc tcacttccag tactttgtaa 120 tctctgggtt tccattcgat ctattctgtc aggatgggat acctttgtga tgatgttgca 180 ctctggatta aaactttcac agaccttggc atgcctctcg acatggccat ggaggtctac 240 atgaacacga agatcaatga tctgcgtaaa tgtcctgtta cttactctgc ttgcttcact 300 tacaaggatt gggtcgatga acacttcatt acccaagcac caattgatga tgattatgtt 360 cccactgagg ttttccctga tgagcctcca gtgtctcaag ttcttcccga acatccaaag 420 gctggtgccg atattgctct tgttgatatc gttgctgacc agctatatag ttctccgatt 480 ttccctctca ctgaggtaaa atgccgtgcc ttagcctcac gggatacaaa tcaactttct 540 aggcttgctg atgctgtaac tgccgttaca gtcgcacaat gtgttgaaca gggtggcacc 600 tctgttggcg gtatccaaga agcgataact tctcgaataa agcgctcttt tggatgggtt 660 gggaaggccg tggagagtgt caacaatatg gcctctgcca caaatttact caataaaatc 720 tttgaacgta ttctgagttc ctttgacttt attgcgcaga ccgtcaatct tttctccgac 780 ttccttaaag ggatgaaaga gaaaatcgcg gaaatgtgtc tcaagacctg ggaaaaactt 840 gctgaatggg gagagcattt ctactatgta atacccatgt tttgttccat ctttttaata 900 gctaccacat gtttcttaat taataaattc ttagctgtcg ttgcacctac gtattgtttt 960 tcttcttctt ccatagtcca acttatcgtt gtaggatgcg ctattgtagg ttgtaaagaa 1020 atgggtgccg cccttttggc tctttcttca gccgggaaaa aatctttcct ggacttgatt 1080 tacgagactt ttggcgttga tacttctgag cattgcgatg aacttccgaa ggacgaaaat 1140 gccattccaa ctccagctga ttggagtcag tttgaaaatt gtcctgcttt tgaacagagc 1200 tcaacctcaa tgactggctt ctttggaata cttggtcttc tcaccttctt tgctcctcgt 1260 ggaatgaagt gtgaccttta cgagatgacc aagtgggctc atggactcaa gggtctcgct 1320 gatgggtacg agaaattcaa atctatcact gagaaactag ctttctgggt ttatgaaaga 1380 ataggtttgg atactacctg ggatgcgcct gccatacaga gtatgatacc cgtgacgggc 1440 attcgttttc aagattggtg tacagaggtt gaaaaactga atattgacat gttaaattac 1500 accaatctgc aagatgatct cacccgtgct cggagactta aggaacaagg cgacaaaatt 1560 caaacccata tgatgtacag ctccgaatcc atttccttca tgatgaggga gaaacttcgt 1620 gcctcgatga ccacaattcc caccataatt gcaaaattcg aaaaagccgt ggacatcagt 1680 ggcactcgca tgtgtccttt cacagttctt ttccatgggc ctgctggctc tgggaagtcc 1740 aattcgatgc ggggctttat gcatgatgtt atgaatgaga tggaggagcc ctctgtcgga 1800 cgcgtgtacc ctcgcaattc tggagataag cattggtctg actatcttcg acaaaccgca 1860 ttgtactacg atgagtttgc tcagaaaaaa ccttgtaatg gtgagagtga cgaacttgaa 1920 ctcattcccc tggtttcttg cagtcatttt cctcttgttg gagcagccat tgaagacaaa 1980 ggcctttcct ttaattccaa atacattttc atgtgttcga atagggccga tgtctcctcc 2040 aatgccggtc tggccgataa tgatgctttt cgcaggcgtc gacatttgtg tgttgaggtc 2100 acacgtgacg atcgggaatt cgatccctca aatccaacat acaaccaaac ttttcagctc 2160 aagaatcctc tgaaacccac ggaaaacctc aaattttcac atgagggtgg tccacttgaa 2220 gaaattgggc cgatgagtta caatgaattg gttgtttatg ccgtcaacag agcccgcgaa 2280 cattttgaca gggaagtcaa agcgatgaag tatgctgtta gcagagccac aaataccgga 2340 aaagctcatg agcaagccat cttctactgc ccacgtttca cgtgtgaaag gatgaaattg 2400 gatactcacg catgccctca cttggcgaat gagcattttg tggaccatga ggtgtatgga 2460 gaatttcgtg gtgaatactt ttgctgtgat aagaatggag tggcctgtga ttgtccgctc 2520 accaactggg agaaaagcat catgcacgat atgtcggcca atgccacaaa tgatgaaatt 2580 gctttagcgt tggccctttt tagtcaagag gaaaatcgcc tgatgtcgga ctatgcgggc 2640 ttctttgaac tcatcgagaa cgtggatagt tggcgtgttg atgctccacc aaaagccaag 2700 aaggtcgatc tgcaagctta tgtgaaccgg acttgggcag attataacga tcgattgcgg 2760 tacctcattt gccagcattt cgagagaacc aaggctgcca ggaacacata tttccagcga 2820 ctcaagactc tcaaggatga tatcaagagc tggagtattg ttggggcgtg gaattccttg 2880 cccatgggtg ccaaatgggt cgtcggtatt atagcactct tttccttcgg agcttccttg 2940 atctggttgc tctcaaaagt tatggccatg cacacatggg accccatgga aatgttagga 3000 gtctttttgg gttccaaatc cttcgttgag gtggtcacgg agcaaggggg atatgccgag 3060 tccggttcca atacccaggc gcccatttat cgtcacaagc gagtaagagc ttacgaacaa 3120 gggtttgcta actcttctca ggtcttggat ttgaatgatt ccgagaaaat tgagtccatc 3180 aagaaagctc agggtgtttt agttttctca aagaatgacg gtaagagctc cacggctgct 3240 gtcacgattt tcaaggacca ccagtttctt ataaccaccc acgagcttgc actcctgaac 3300 ttttcaaagg gctgtatcct gactacgcgt tctggcagtt cctacagcat ttacataaat 3360 gccaatgatg ttcgaactgg ttccaaagga ggtattaagg atcctattag tgttgtcaaa 3420 gtgtccacct attttgaaat ggcaaaggct tgcaccggtt cagtgatatt tgactttgga 3480 actttctgtg agggacatca cgatgggatt gttgtgccga atgctcagaa ggtgctggac 3540 caaactgttc acaagactgc tttttcccgg agacatgagg ttattgatgt tcacaacatg 3600 aaaggccggg tcgtgtggca ggctaacaat ctcttagcag cgcctttgta ccaccaagtt 3660 ggacactgtg ggagactcct gttggccagg gatgaagcaa aatgtttgaa gattgtcggg 3720 attcacgttg ctggagtggt gattcaagag aagcacatta gtctgttttc cgagatcaat 3780 ggcatgcaca aaacagccga aatggctgtg caacaaggta tggaagtgga tattctagag 3840 cttgtggaac cggaagtcaa aacggacatg gttatcaaga taggtcacgt tgcgcaggga 3900 caacaatttc gacccgccac caaaacttcc atcgtcaaaa gtcaaatcca tgatactttg 3960 tggagggctc ccgaaactga accaaccgtg atatcacccg ttgatccccg cgtgccctat 4020 gcttttgacc cctacactgc tggaatcatg aaatttgaga aggaggttgg accccttgat 4080 ttttctgatc ccgacactcc agagagcact gttattgaag atatatctga ggagttgttg 4140 agagaaaaga agtctttggg tggttttgct ttggacaccg tgtgttccaa tgaagttgca 4200 attaatggag tggatagtgt cccttatgct gagaggttgg tcatgagcac ttctgaaggt 4260 tatccttttg tcctctcaag gaaggctcaa gacactggta agttccgttt ctttgataag 4320 gatggagacc gttgggttgc aaaggacgag gttttagatg atctaaagga gctggaagaa 4380 gctatcaagt ccgatgattt taaaggtggc attatcacta ttgcttgtgc caaagatgag 4440 aaaaccaaga tgaagagggt tagggaagtg ccaaagactc gaatttttga gattttaccc 4500 ttccactata atatcctggt acggaaatat tatctcttct tcatgcaatt cataatgagc 4560 ctccatgact ttctcccatg taaggtaggc ctcaacgttt acagtaagag ttgggatact 4620 atgcatgctg agcacaatag gtttgcttat cactttaacg gagattacac tggttttgat 4680 actgccacac caagagtctt aatgatgaag attgccgata tggtctcaaa tttggctggt 4740 gatggtcgtg aaaacgccat cgttagaaga aatttgatga agatggctgt cgaacgacgt 4800 attctggttc tcagggatct ttatcaggtt aaaggaggca caccttcagg ctttgctctc 4860 accgtcatca ttaactcggt ggtgaaccag ttttacctta tgtgggcctg gaggaagatc 4920 atgagcagaa tagacccagg tctggtaccc tatcgcgtca tgaggtctca ttgtactttc 4980 tctgtgtatg gagacgacaa cgttgtttct ttcagcttac aagttaagga tatgtataat 5040 cttgtgacca ttgctgctga actcaaaacc attggtgtca atttatctga tgggaagaag 5100 actggaaatc ttgttaaatg gatggaattt tcagaacttg atttcctcaa gaggagatgg 5160 gttctttatt ccggacaagg ttttctatgc cccttacata aatccgccat tgaagagcgg 5220 ttgttctggg tgagatctag cgaggatagc gtggaaaccc tggacgacaa ttgttattcc 5280 gcccttatgg aggcttttca tcatggtcgc gattacttta acttcttgag agctagaatt 5340 caagacgctt atgataaggc cggtttatat caaccacatt tactacattt caatgaagcc 5400 caagctattt ggttggaaca gcattctata gctcctccta atgattacct tgatggtatc 5460 aagaaagagg tcttacctct aacagctggg cgggacgtta tgagaaccat tacgaccact 5520 attgatgcta cctcggttaa aggttacaat aaagctcata aagaacaatc gtatcaccgc 5580 acaaaagttt tccttaaccc tttggcgacc gaaataacct ggttgcgctc aggacaagca 5640 gcccatctag atgttccagc caaactccat cgacgcaact ttgagggtat tgctattaaa 5700 gtggctaatc tattgaaagg ggagaattgt tgcatcgtgg agggtacgtg tggtatcaat 5760 agctttgctt tggcactggc tattggtttc cttcgaaaag agttgacggg ggttggctgt 5820 gttaatctcc tagcttcata ttcttcaaat gacgctagtt attacacagg cttagccatg 5880 ttgactactg tagttggtta atttgggtcc gcctgcccct taaagcaggc atcccgaggg 5940 agaatgtatg tgggatcatc tgattttaat caattggacc cacttgtgta ggaaggaact 6000 taattgtttc gaccatcccg ctaccatccg tgataacacg gtttagggaa acctggtagt 6060 cccgtgaatt gacgcggaac agcttctcac gccgctgtat aattgaggtt cgtgagccca 6120 ttcccggttt gaaggaatag ggttgttggt tcccataacc atccagtaag cgaccacgac 6180 tgtgacaaag ggtcttttaa tttacatgtt gtagtttagt gacaatccaa gcggaaagac 6240 gctgggcgcc gacagttctc tatgtaggac accggctctt ggtagtaggg tgttacagcc 6300 cttctttgcc cctaagtggg ataccaagga acactgtaaa cagtgcctcc tgttagcgag 6360 atcaggtgac gatccaagcc caaagaggct ggtggtgtat tcctcactaa ggtgttggag 6420 tatcgggaac ccccatattg gtcattacgg tgaaagataa cacgtgaata ttctttcatc 6480 tgtgctggta tggtgggggg cgtgaaccct ttacttgaaa cacatggaat aggttctgtg 6540 gtgccttgaa ccacaaccca gtccatcatg acattaaact gtttggagat gtctctgcca 6600 taagtgagac taggacgtga accgaatttc accaaccctc atggagggaa agcagtgatg 6660 gtggagtagt gacccacttc agccgggtta tcaattgttt ttcttctagt ggtgacgtac 6720 tagagtaacc tgaggttcgc ccgatcagtg aaaggctttg tggacactcc taaagatgtg 6780 tcagtttcac catggggagg cttgatgagc ccatggaatc ctacctgaag attataactc 6840 aggcttggtc actctggaac caataaaatt ctggagaccg ctctgatggt gagctttgtt 6900 ttaccattcg tattgctgac gttacagcac caaaaatagt agttttagat aaaagtcttt 6960 aaatttaact agcatttaat gtcgacgagt ttcggcattc taactgtaga cttaacttta 7020 gatagatgta aatatg 7036 //