ID   AJ311375; SV 1; linear; genomic RNA; STD; VRL; 1855 BP.
XX
AC   AJ311375;
XX
DT   10-FEB-2003 (Rel. 74, Created)
DT   10-FEB-2003 (Rel. 74, Last updated, Version 1)
XX
DE   Narcissus carlavirus genomic RNA for TGB2, TGB3, coat protein and Nucleic
DE   acid binding protein, isolate Chongming Island
XX
KW   coat protein; nucleic acid binding protein; TGB2; TGB3.
XX
OS   Narcissus common latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1855
RA   Adams M.J.;
RT   ;
RL   Submitted (22-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Chen J., Chen J., Langeveld S.A., Derks A.F.L.M., Adams M.J.;
RT   "Molecular characterization of carla- and potyviruses from Narcissus in
RT   China";
RL   J. Phytopathol. 151:26-29(2003).
XX
DR   MD5; 79abfd2e05c33889c77a6cd66f84f9ad.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1855
FT                   /organism="Narcissus common latent virus"
FT                   /host="Narcissus sp."
FT                   /isolate="Chongming Island"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Shanghai"
FT                   /db_xref="taxon:160844"
FT   CDS             1..327
FT                   /product="TGB2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q80P44"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q80P44"
FT                   /protein_id="CAC85382.1"
FT                   /translation="MPLSPPRDFTKVYIAAAIGATFALVTWLLTKNTLPAVGDRDHNLP
FT                   HGGLYRDGTKAIKYNSPCKLNSVEGHSHGFWTQPWALVSILSILIIISSRFDPRLCRRC
FT                   GTIH"
FT   CDS             327..512
FT                   /product="TGB3"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q80P43"
FT                   /protein_id="CAC85383.1"
FT                   /translation="MLLLAAVTVAVFAVTLYILTTAQPSCLVVVTGESVRFQGCPTTPE
FT                   FFEGLSKLRPLSSSCL"
FT   CDS             540..1451
FT                   /product="Coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q80P42"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q80P42"
FT                   /protein_id="CAC85384.1"
FT                   /translation="MSGTTGAESFPAPSQSEQRARDRAGASQKTNENLRKHATAEGDTS
FT                   DEEVSLEQRLNNLREFLRKQRGAVRVTNVGFETGRPTLNLTDDMRPDPSNPYNRPSIEA
FT                   LATIKPRAVSNNMATTEDVMRIYTDLEGLGVPTEQVQTVVIQAVLFCKDASSSVFLDPR
FT                   GSFEWTGGAISADAVIAVLKKDASTLRRVCRLYAPVTWNYMLTHNAPPSDWAAMGFQYE
FT                   DRFAAFDCFDYVENSAAVQPLEGLIRRPTPREKIAHDTHKDIALRAANRNQVFGNFSSE
FT                   VTGGRNGPELTRNYGNSGAHWA"
FT   CDS             1451..1777
FT                   /product="Nucleic acid binding protein"
FT                   /note="ORF6"
FT                   /db_xref="GOA:Q80P41"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q80P41"
FT                   /protein_id="CAC85385.1"
FT                   /translation="MHHSLRVALLLAKVMYDSTGVYSFELAYSISIASGRPVGGGKSSY
FT                   ARRRRAASIGRCHRCYRLWPPMHSTTRCDNKTCVPGISYNERVAQYIVDGVTEVIPSWN
FT                   KALL"
FT   3'UTR           1778..1855
XX
SQ   Sequence 1855 BP; 439 A; 479 C; 453 G; 484 T; 0 other;
     atgcctctta gtccgccccg tgactttacc aaggtataca tcgccgctgc aatcggagct        60
     acgttcgccc tcgtcacttg gttgctcact aagaacactc tacccgcagt cggtgatcgc       120
     gaccacaatt tacctcacgg cggtttatat cgcgacggta cgaaggccat caagtacaac       180
     agtccctgca aactcaattc ggttgaaggt cattctcacg gcttctggac acagccgtgg       240
     gctcttgtat ccatattatc catcctgatt ataatttcga gccgctttga tccgcgtctt       300
     tgccgccgct gtgggactat ccactgatgc tattgctcgc cgcagtcact gtggctgtgt       360
     ttgccgttac attgtacatc ctcacgacag cacaacccag ctgcttagtg gtagtgactg       420
     gtgaatccgt acgcttccag ggctgcccta caacaccaga attctttgag ggtttgtcca       480
     aactaaggcc gctttcttcc agttgccttt aggtatatag gctattatcg atatacatta       540
     tgagtggaac aactggagct gagtcttttc cagcaccatc acaatctgag cagagggcac       600
     gtgatcgtgc tggagctagc cagaagacca atgaaaacct gaggaaacat gctaccgctg       660
     aaggggatac atctgatgag gaggtctcac tggagcagag gctcaataat ctacgggaat       720
     tcctccgcaa acagcgtggt gcagtacgcg tgacaaatgt gggctttgag accgggcgcc       780
     cgactctgaa tttgactgat gacatgcggc ctgaccccag caatccttac aaccgcccat       840
     caattgaggc tttagcaacc atcaaaccaa gggcggtctc gaacaatatg gcaacaactg       900
     aggatgtgat gcggatctac actgatctcg agggccttgg ggtccccact gaacaagtgc       960
     agactgtggt gatccaagct gtcctcttct gcaaggatgc aagtagttca gtattcctag      1020
     atccccgtgg ttctttcgag tggactggtg gggctatttc cgctgatgcc gtaattgctg      1080
     tactcaagaa ggatgctagc accctcaggc gagtttgtcg actctacgca ccagtcacat      1140
     ggaattatat gttgacccac aatgcaccgc catctgactg ggctgctatg ggctttcaat      1200
     acgaagaccg tttcgcagcg tttgattgct tcgactacgt ggagaattct gctgctgtac      1260
     aaccacttga ggggctgata cgaaggccaa cgcctcgcga gaaaatagct catgataccc      1320
     acaaagacat tgcacttcga gctgctaatc gcaaccaggt ttttgggaac ttttcaagtg      1380
     aggtcactgg tgggcgcaac ggaccggagc tcacacgcaa ttacggtaat tccggagctc      1440
     actgggcata atgcatcact ctcttcgtgt tgcactacta ctagctaaag ttatgtatga      1500
     tagtactggc gtgtatagct ttgagcttgc ttactctatt tctatcgcgt ctggcaggcc      1560
     tgtaggcggc ggtaaatcgt cctacgctcg ccggcgccgt gccgctagca ttgggcgttg      1620
     tcaccgctgc taccgccttt ggcctcctat gcattctact acccggtgtg ataataaaac      1680
     gtgtgtgcct ggcatctcat acaatgagcg tgtagctcaa tatatcgtgg atggagtaac      1740
     cgaggtgatc ccatcctgga acaaagcact gttgtgagtg gccgctaaat cctatttaat      1800
     atataaggtg tgtcactata aataaaaaat ttggttttta agctattttt taccc           1855
//