ID   AJ311370; SV 1; linear; genomic RNA; STD; VRL; 1607 BP.
XX
AC   AJ311370;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Shallot yellow stripe virus partial genomic RNA for viral polyprotein
DE   (ORF1), isolate Hangzhou
XX
KW   coat protein; NIb protein; viral polyprotein.
XX
OS   Shallot yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1607
RA   Adams M.J.;
RT   ;
RL   Submitted (22-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 6c0833edd0679ce23d24eab89bd682ce.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1607
FT                   /organism="Shallot yellow stripe virus"
FT                   /host="Allium fistulosum var. caespitosum"
FT                   /isolate="Hangzhou"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:62059"
FT   CDS             <1..1413
FT                   /codon_start=1
FT                   /product="Polyprotein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q8UYU1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UYU1"
FT                   /protein_id="CAC85377.1"
FT                   /translation="GNNSGQPSTVVDNTLMVMLSVQYTLLKNNITFMEQDSIIRYFCNG
FT                   DDLLIATHPDHSHMLDSFTKHFADLGLEYDFSSRTTNREELYFMSHRGLLRDGIYIPKL
FT                   DKERIVSILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYKWVLEQAPYNLIAQ
FT                   TGKAPYIAETALKKLYMDEQATESELEKYIRLYQILDDRIPAPSYVSYQASESEDAANV
FT                   NTDKQVGKNKDKDRDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQ
FT                   VDLYNTRATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMD
FT                   GDNQMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSL
FT                   ARYAFDFYEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADV
FT                   NKDHHTLLGLRM"
FT   mat_peptide     <1..636
FT                   /product="NIb protein"
FT                   /note="ORF1"
FT   mat_peptide     637..1410
FT                   /product="Coat protein"
FT                   /note="ORF1"
FT   3'UTR           1414..1607
FT                   /note="ORF1"
XX
SQ   Sequence 1607 BP; 535 A; 283 C; 363 G; 426 T; 0 other;
     gggaacaata gtggtcagcc ttccacagtt gtggataaca cattgatggt gatgcttagt        60
     gttcaataca cattattaaa gaataatatt acatttatgg aacaagactc tataattaga       120
     tatttttgta acggtgacga tttgctcatt gcgactcatc cagaccacag tcatatgctg       180
     gactcgttca cgaaacactt tgctgatttg ggacttgaat acgatttttc gagtcggacc       240
     acgaatcgag aggaactata ttttatgtct catagaggct tgcttagaga tggtatttat       300
     atacccaaac ttgataaaga acgcatagtt tccatacttg agtgggatag agctaaagag       360
     ccagaacatc gattggaagc tatatgcgcc gctatggtag aagcgtgggg ttatgacgag       420
     ttgctacacg aaattaggtt attttataag tgggtattag agcaagctcc atacaattta       480
     atagcccaaa ctggaaaagc accgtacata gcagagactg cacttaagaa attgtatatg       540
     gatgaacaag caactgaaag tgagttggaa aagtacattc gactctatca aatacttgat       600
     gatcgcatac cagcaccaag ctatgtttca tatcaagcat cagagtcaga agatgctgca       660
     aatgtaaaca ccgataagca ggtcggaaag aacaaggaca aggacaggga cgttgatgtt       720
     ggcacgtcag gcgagttttc agttccaaag gttaaaatgt tgtcagataa aatgcgacta       780
     ccacgagtcg gaaagaaagt aatacttaat ggtaaacacc tcttatctta taaacccgac       840
     caggttgatt tatacaacac acgagcaaca cacgcacaat ttaagacgtg gtacgatgca       900
     gtaaaacttg agtatgaatt gacggatgaa caaatgaaga ttgtcatgaa tgggttgatg       960
     gtgtggtgca ttgagaatgg aacatcacaa aatttaacgg gggtttggac aatgatggac      1020
     ggagacaacc aaatggaata tccacttagt cctattattg ataacgcaaa gccaacattt      1080
     agacaaataa tggcacattt cagtgacgca gctgaagcgt acattgaata cagaaatgcc      1140
     acagaaaaat acatgccccg gtatggactt cagcgaaact taagagaata cagcttagca      1200
     cgttacgcat tcgactttta tgagatgaat tcaaagacgc cgatccgcgc aaaggaagct      1260
     catatgcaga tgaaagcggc agcggttaga ggggtagcta accgtatgtt tggcttggat      1320
     ggtaacataa gcaccgatga tgagaacaca gaacgacata cagcagctga tgtgaataag      1380
     gatcatcaca cactgctcgg tcttcgtatg taatatacat atatatattt gatatatagt      1440
     gtcgtgcatt atctttcgtt atatttgaat atgagcaaac atagtgtggt cacaccaccg      1500
     tttgtggcat agtatatgat ataacttcgc tagcattatt tgcaccatga gacttagtgt      1560
     ggtttaccac ggaattagtc aagtgttgta cgttttgtta gggagac                    1607
//