ID   AJ310205; SV 1; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   AJ310205;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Turnip mosaic virus partial genomic RNA for polyprotein
XX
KW   coat protein; NIb protein; ORF1; ORF2; ORF3; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Variation between Turnip mosaic virus isolates in Zhejiang province, China
RT   and evidence for recombination";
RL   J. Phytopathol. 150:142-145(2002).
XX
DR   MD5; 380f5448045976b802206a97d40e09c7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Turnip mosaic virus"
FT                   /host="Radish"
FT                   /isolate="R2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1500
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q8QXJ9"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXJ9"
FT                   /protein_id="CAC84448.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLRKSGIPNELRDSLVRFFVNG
FT                   DDLLLGVHPKYEYVLDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPYSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTE
FT                   EQKQAEKERKERERSEKERERQRQLALKKGKNAAQEEGERDNEVDAGTSGTFSVPRLKS
FT                   LTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..633
FT                   /product="NIb protein"
FT                   /note="ORF2"
FT   mat_peptide     634..1497
FT                   /product="coat protein"
FT                   /note="ORF3"
FT   3'UTR           1501..1709
XX
SQ   Sequence 1709 BP; 534 A; 343 C; 435 G; 397 T; 0 other;
     gggaacaata gtgggcagcc atcaacagtc gtggacaaca cgctcatggt catactagca        60
     gtcaactact cactcaggaa gagtggaatt ccaaatgaat tgcgcgatag cctcgtcagg       120
     tttttcgtca atggagatga cttgctgcta ggcgtacatc caaagtacga gtatgtcctt       180
     gacactatgg cggataattt ccgtgaactg ggcttgaagt acaccttcga ttcaagaacc       240
     agagaaaaag gtgacctttg gttcatgtcg caccaaggac acaaaagaga aggaatctgg       300
     atccccaagc tggaaccaga gcgaatagta tcgatcctag agtgggatcg atcaaaagag       360
     ccatgccacc gacttgaggc aatctgcgca gcaatgattg aatcgtgggg atatgataag       420
     ttgacccatg aaatacgcaa gttttatgca tggatgatcg aacaggctcc atacagctct       480
     ctagcacaag agggaaaagc tccttacata gcggaaacgg cactaaggaa actttacctt       540
     gacaaagaac cagctcaaga agatcttact caatacttac aagcaatctt cgaagattac       600
     gaagatggtg ctgaagtgtg tgtttatcac caggcaggtg agacgcttga tgccggtcta       660
     acagaagagc agaagcaggc tgaaaaggag agaaaggaga gagagaggtc agagaaagag       720
     cgagaaaggc aaagacagct agcgcttaag aaaggtaaaa acgcagcaca agaggagggc       780
     gaacgtgaca atgaagtaga cgccggaact tccggaactt ttagcgtgcc taggctcaag       840
     agtcttacaa gcaaaatgcg tgtgccgaag tatgagaaaa gagttgctct caacctcgat       900
     catttgatct tatacacgcc ggagcagaca gatttatcca acacgcgttc aacgcggaag       960
     cagtttgaca cttggtttga aggtgtcatg gctgactatg agctaacgga ggataaaatg      1020
     caaataattc tcaatggttt aatggtctgg tgcattgaga atggaacctc cccgaacata      1080
     aacggaatgt gggtgatgat ggacggagat gatcaggtgg aattcccgat caagccgctc      1140
     attgaccacg ccaaacccac atttaggcaa ataatggccc atttcagtga cgtagctgaa      1200
     gcgtacattg aaaagcgtaa ccaggaccga ccatacatgc cacgatatgg tcttcagcgc      1260
     aatttaaccg acatgagctt agctcgttac gcatttgatt tctacgaaat gacttctaga      1320
     actccaatac gtgcgagaga ggcacacatc cagatgaaag cagcagcact gcgtggcgca      1380
     aataataatt tgttcggctt ggatggtaac gtcggcacaa cggtagagaa cacggaaagg      1440
     catacgaccg aagacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga      1500
     agttgtatgc tagtagacta taagtagtta agtttactcg ttagtattct cgcttatggg      1560
     aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc atgtgtgttg ttgttacttt      1620
     ctatattttc gccgaacttt ttattggtgt tagcgcatgt ggtgagatac tatctcgatt      1680
     gccttaacat ttgataggaa gcaagggac                                        1709
//