Dbfetch

Dbfetch

ID   AJ310199; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   AJ310199;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus ORF3, ORF4, ORF5 and ORF6, genomic RNA
XX
KW   ORF3; ORF4; ORF5; ORF6.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 3d5750172c38708f112450500fa18c5a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="garlic"
FT                   /isolate="bj: Beijing"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Beijing"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /product="TGB2 protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q8UZA8"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZA8"
FT                   /protein_id="CAC84439.1"
FT                   /translation="MPLSPPPDHTKTFFAGAVGVCIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIVYNSPARNFPSSNLLLNFSSPLCLLALILGLICLSERIKSSSSTRIT
FT                   CSCNHS"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZA7"
FT                   /protein_id="CAC84440.1"
FT                   /translation="MQLQPLVALVTGLLATLLLCYSLENFKTEKCTVVITGESVKIIGC
FT                   EFTRDFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8UZA6"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZA6"
FT                   /protein_id="CAC84441.1"
FT                   /translation="MANEEEELSNVQNLPTRDPGTIPERERNKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1386..1715
FT                   /product="Nucleic-acid binding protein"
FT                   /note="ORF6"
FT                   /note="5'-end may be at 1419 (by comparison with other
FT                   isolates)"
FT                   /db_xref="GOA:Q8UZA5"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZA5"
FT                   /protein_id="CAC84442.1"
FT                   /translation="MFSQKQLQRESMLIKQRTYRRLLRAIFKLHTKENCVDIINIIVSK
FT                   IVCESAGASRYARARRAMSIGRCPRCFRCSPRFYFTKNCDTRTCSPGISYNAKVKDFIV
FT                   DGVTM"
FT   3'UTR           1716..1808
XX
SQ   Sequence 1808 BP; 515 A; 387 C; 404 G; 502 T; 0 other;
     atgcctctta gtcctccgcc tgatcacaca aagactttct tcgctggtgc tgtcggagtt        60
     tgcatagctc tctgcttgta caccttgact cgctcaacgt tgccacacgt cggggataac       120
     atacatagtt taccgcacgg tggttgttat caagacggta ccaaacggat tgtctacaac       180
     agtccagcta ggaatttccc gagtagcaac ctgcttctga acttttcctc tccactctgt       240
     ttgcttgcac taattttggg tttaatctgt ttaagtgaga ggatcaaatc aagctctagt       300
     acacgcatta catgcagttg caaccactcg tagctttagt cactggtctt ttagctactt       360
     tacttctctg ttatagcctt gaaaatttca aaactgaaaa gtgtactgtg gtgattactg       420
     gtgaatcggt caagataatt ggttgtgagt ttacaaggga tttcattgac ttcgccaagc       480
     aggcaaaacc ttttggttca ctttaggtac acagcgctct aaattgatat tatggctaac       540
     gaagaagaag aactcagtaa cgtgcagaac ttgccgactc gcgatccagg gactatcccc       600
     gagcgggaac gaaacaaagc agtgaacgat gttggtgtca tggaacgtga aggttttgaa       660
     gccgtccttc gaaggagcga aagtaggttc aacaaactta aggagaagtg catgtctgaa       720
     ttgtctagcg tgaacgtcac gaactgcggg tgggagtctg gaagacccaa agctcagctt       780
     gctgacagtc tcaaagggga tgcttcaaat attttcacta ggccctccat ggatgccctc       840
     cttgttcgaa attacgcacc tgaaagtaac aacatggcga ctgctgagga tttggcgaaa       900
     atctccgcca aagtacaagc tcttggagcc ccagaagaat gtttagctga agtcttctgg       960
     gacatatgca tgtactgcac cactgcagga agttctccaa atgtcaatcc caaaggaact      1020
     atatctgtcg ggggtaaagt cgtaactagg gacatggtag tagcagtaat caaagaatac      1080
     tctacattgc gacaagtctg ccgctgctac gcgcctgtcg tttggaatta catgttgttg      1140
     aatgaacaac cacccgcaaa ttgggatgca aaaggtttca ccgagaacac caaatatgca      1200
     gccttcgata ctttcgatgc ggtgacgaat aaagctgcaa tccaaccact tgagggtctg      1260
     attcgggccc ccactgacgc tgaaagaatc gcatttgcaa cgcacaaaaa gttggccctg      1320
     gctaagaatg ctcaaaattc tcgttatgcc aatacttctg ctgaggttac tggaggtttc      1380
     ttcggatgtt ttcccaaaaa caacttcaga gagaatcgat gttgatcaaa cagagaactt      1440
     accgtcgttt attgcgtgct atatttaaat tgcatactaa ggagaattgt gttgatataa      1500
     taaatattat tgtaagtaaa atagtgtgtg aaagtgcggg tgcttcacgt tatgctcgag      1560
     ctcgtagagc catgagcata ggtaggtgcc ctcgctgctt ccgatgttca cctcgttttt      1620
     atttcactaa aaactgtgac actagaactt gttccccagg aattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactacaaac cttggctagt      1740
     tgcccataaa acctaaataa tgtataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//