ID   AJ310196; SV 1; linear; genomic RNA; STD; VRL; 1845 BP.
XX
AC   AJ310196;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sorghum mosaic virus partial genomic RNA for polyprotein
XX
KW   coat protein; NIb protein; ORF1; ORF2; ORF3; polyprotein.
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1845
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s00705-001-0799-6.
RX   PUBMED; 12111432.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147(6):1237-1246(2002).
XX
DR   MD5; f8c2e1d386c9be5716c8cd1a96a71c79.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1845
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Sugarcane"
FT                   /isolate="Linhai"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q8QXL3"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXL3"
FT                   /protein_id="CAC84399.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICKMYANG
FT                   DDLLLAIRPDYEHLLDEFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIKEGELDVYYTQFIKDLPEYVEDELIDVFHQAGGGTVDA
FT                   GANAADATAQAQREAATKAQQDADAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADA
FT                   KKKADDEAAQRTQNQRDRDVDAGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRAEFDRWYAAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVW
FT                   TMMDGEEQRTFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLT
FT                   DYNLARYAFDFYEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHT
FT                   AGDVSRNMHTLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb protein"
FT                   /note="ORF2"
FT   mat_peptide     643..1605
FT                   /product="coat protein"
FT                   /note="ORF3"
FT   3'UTR           1609..1845
XX
SQ   Sequence 1845 BP; 611 A; 359 C; 434 G; 441 T; 0 other;
     gggaataata gtgggcagcc atctactgtt gttgacaaca cattaatggt gatcatagct        60
     ttcaattaca cgatgctatc ttgcgggatt gaagcagaca tgatagatga aatatgcaaa       120
     atgtatgcga atggagacga tctcttacta gccattcgac cagattacga acatctgcta       180
     gatgaatttt ctaaacactt ttctgatcta ggattaaact ttgatttcac atcacgaact       240
     agagatagag aagaactatg gtttatgtca acacgaggca tcaaaatcga tggaatgtac       300
     atcccaaaat tggagcagga aagaatagtt gcaatattag agtgggacag atcattgtta       360
     cctcaatata gactagaagc aatatgtgct gccatggtgg aagcttgggg atatccacaa       420
     ttattacatg agattagaaa attttatgcc tggattctcg aaatgcaacc attcgccaca       480
     ctagcaaaag aagggctcgc tccatacata gctgaaacag ctctacgcaa tctctacaca       540
     ggagcaggaa tcaaagaagg ggaattggat gtttattata cacaatttat taaagattta       600
     cctgagtatg tggaagacga gctgattgat gtgttccatc aagcaggagg cggcacggtg       660
     gatgcgggag ctaacgcagc agatgcaacg gcacaagcgc agcgagaggc tgcaacaaaa       720
     gctcaacagg atgccgatgc gaaaaagaga gcagatgatg aagcagcaga gaaacagaga       780
     caagatgctg ctgctaagaa gaaagctgac gatgatgcta aagcaaaagc agatgctgat       840
     gcgaaaaaga aagcagatga cgaagcagcg caaagaacac aaaatcaaag agatagagac       900
     gttgacgctg gaacgtcagg cacagttaca gtaccaaagc tcaaagctat gtccaagaaa       960
     atgcgcttgc cacaagcgaa aggaaagaat attttacatc ttgatttcct acttggatac      1020
     aagccacaac agcaagacat atcaaacaca cgagcaacac gagcagagtt tgatagatgg      1080
     tatgcagccg tacagaaaga gtatgaactt gatgatacac aaatgacagt tgtcatgagt      1140
     ggattaatgg tatggtgcat agaaaatggt tgctcaccga acatcaacgg tgtttggacc      1200
     atgatggatg gagaagaaca aagaacattt cctttaaagc caataattga aaatgcttct      1260
     ccaactttta ggcagattat gcatcacttt agtgatgcag ctgaagcgta tatagaatac      1320
     cgtaattcaa cggaacgcta catgccaaga tacggacttc agcgaaactt gaccgactac      1380
     aatttagcac gttatgcttt tgatttttac gagattacat cacgtacaac tgcccgtgct      1440
     aaggaggccc acatgcagat gaaagccgca gcagttcgtg gttcaaacac ccggatgttc      1500
     ggcttggatg ggaatgtcgg cgagtctcag gagaatactg aacgtcacac tgctggcgac      1560
     gtgagtcgta acatgcacac ccttcttggg gtgcaacagc atcactgacg tgacggaaac      1620
     cctgtttgca gtacctaagt attatatata ttttctatgt aagtgaggct atgcctcgtt      1680
     agtataatat atatttactt tcaaagtatt tactattctg caagggagtg aggacacatc      1740
     ctccaacctt ttagtacgta ctttactagc ttcgaaccac tagacggacg atctgttgtg      1800
     tggccgtgct acgatgcagg tgctgcgagt cttgtggcaa gagcc                      1845
//