ID   AJ310193; SV 1; linear; genomic RNA; STD; VRL; 1809 BP.
XX
AC   AJ310193;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sorghum mosaic virus partial genomic RNA for polyprotein
XX
KW   CI protein; ORF1; ORF2; polyprotein.
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1809
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s00705-001-0799-6.
RX   PUBMED; 12111432.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147(6):1237-1246(2002).
XX
DR   MD5; 84a3b827885cb2e1a28b3bf14347bb1e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1809
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Sugarcane"
FT                   /isolate="Xiangshan"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..>1809
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q8QXL6"
FT                   /db_xref="InterPro:IPR001650"
FT                   /db_xref="InterPro:IPR011492"
FT                   /db_xref="InterPro:IPR013648"
FT                   /db_xref="InterPro:IPR014001"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXL6"
FT                   /protein_id="CAC84433.1"
FT                   /translation="LTLNTDKQLTIDFDTTQDLPADTFSNDVTFEQWWSNQLENNRTVP
FT                   HYRIGGEFAEFTRQNAATVSIGIAHNRIEKEFLLRGAVGSGKSTGLPYHLSQRGKVLLL
FT                   EPTRPLAENVCRQLQGPPFNVSPTLQMRGLSSFGSTPITIMTSGFALHMYANNPDKISN
FT                   YDYIIFDECHIMEAPAMAFYCLLKEYNFDGKIIKVSATPPGRECEFSTQYPVDIHVCEN
FT                   LTQNQFVLELGTGSKADATKYGNNILVYVASYSDVDSLARALTEHHYSVIKVDGRTMKQ
FT                   DTTGIHTNGTDARKCFVVATNIIENGVTLDVDVVADFGLKVSAELDVDNRAIMYRKVSI
FT                   SYGERIQRLGRVGRTKPGTIIRSGVTMKGSQEIPAMIATEAAFQCFAYGLKVITHNVST
FT                   TYLAKCTVKQARTMMHFELSPFIMSELVKFDGSMHPQIHEKLKKYKLRDSVIMLRTNAV
FT                   PYPNVHNWLTVKDYNKIGCNLELGEYIKIPYFVRGVSEKLYSEIYDIVLKYGSTNCCGR
FT                   LSSACAGKVAYTLRTDPYSLPRTIAIINRLICEEHAKREHYNTMISNPSSSHAFSLSGI
FT                   VNMLASRYMKDHSKENIEKLTRVKDQL"
FT   mat_peptide     <1..>1809
FT                   /product="CI protein"
FT                   /note="ORF2"
XX
SQ   Sequence 1809 BP; 612 A; 331 C; 376 G; 490 T; 0 other;
     ttaacgttga atactgataa gcagctaacg atagacttcg atacaacaca agatcttcca        60
     gcggacacat ttagtaatga tgtaactttt gagcaatggt ggtctaatca gttggaaaat       120
     aacagaacag ttccacacta ccgcattggc ggcgaattcg cagagttcac aagacaaaac       180
     gcagcaacag ttagcatagg gatagcacac aatcggatcg aaaaggaatt tctattgcgt       240
     ggagctgtgg gttcaggaaa atcaacagga ctgccgtatc atttgagtca acgaggaaaa       300
     gttcttttgc tggaaccaac tcgtcccttg gcagagaatg tttgtaggca gttacaggga       360
     cccccattta atgttagtcc aactttgcaa atgaggggtt taagttcttt tggttccact       420
     ccgataacca taatgacgtc gggattcgct ctacatatgt atgcaaacaa cccagacaaa       480
     attagtaact acgattatat catttttgat gaatgtcata taatggaagc accagcaatg       540
     gctttttact gtttacttaa ggaatacaat ttcgatggta aaatcataaa agtctcagcg       600
     accccaccag gaagagagtg cgaattctca actcagtatc cagtagatat acacgtttgt       660
     gaaaatttaa ctcaaaatca atttgttttg gaattgggca ctgggtctaa agcagacgca       720
     acgaaatatg gaaataacat tcttgtatat gttgcaagtt atagtgacgt agattcctta       780
     gcacgagcgc taacagaaca tcattactca gtaattaagg ttgacggaag aacaatgaaa       840
     caggacacaa caggaattca cacaaacggg actgatgcca gaaagtgctt cgtggtcgcc       900
     actaacatta ttgaaaatgg cgttacacta gatgtcgatg ttgtagcgga ttttggcctc       960
     aaagtttcgg ctgaactaga tgttgataat cgagcgataa tgtatcgaaa ggttagtata      1020
     tcgtatggtg aacgaattca gagacttgga agagttggac gaactaaacc tgggactatc      1080
     attagatcag gtgtgacaat gaaaggatca caggagattc cagctatgat agccacagaa      1140
     gcggcctttc agtgttttgc atatggactc aaagttataa ctcataatgt ttcaacaacc      1200
     tatttggcaa aatgtactgt aaaacaagca agaactatga tgcattttga actttcacct      1260
     tttataatgt ctgagttagt taaatttgat ggttcaatgc atccccaaat acatgaaaaa      1320
     cttaagaaat acaaacttag ggattcagtt ataatgctca gaacaaatgc cgtgccttac      1380
     ccgaatgtcc acaactggtt gaccgttaag gattacaata agataggatg caatcttgaa      1440
     ttgggtgaat acataaagat tccatatttc gttagaggtg tatcagaaaa gctatacagt      1500
     gaaatatatg atatcgttct taaatatggc tcaacaaatt gttgtggcag actatcgagc      1560
     gcctgtgcag ggaaagtggc atacactctg agaaccgatc cttactcgtt accgcgaacg      1620
     attgccatca taaacagatt aatctgtgaa gagcatgcaa agagagagca ttacaataca      1680
     atgatttcaa atccttcctc ttcacacgct ttttcattga gtggaatagt taacatgctt      1740
     gcttcaagat atatgaaaga tcactcaaag gaaaatattg aaaaactcac aagagtgaaa      1800
     gatcagctc                                                              1809
//