ID   AJ310191; SV 1; linear; genomic RNA; STD; VRL; 1809 BP.
XX
AC   AJ310191;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sorghum mosaic virus partial genomic RNA for polyprotein
XX
KW   CI protein; ORF1; ORF2; polyprotein.
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1809
RA   Adams M.J.;
RT   ;
RL   Submitted (28-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s00705-001-0799-6.
RX   PUBMED; 12111432.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147(6):1237-1246(2002).
XX
DR   MD5; 696a802f613042c92a1a61cadfe2fb08.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1809
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Sugarcane"
FT                   /isolate="Linhai"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..>1809
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q8QXL8"
FT                   /db_xref="InterPro:IPR001650"
FT                   /db_xref="InterPro:IPR011492"
FT                   /db_xref="InterPro:IPR013648"
FT                   /db_xref="InterPro:IPR014001"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXL8"
FT                   /protein_id="CAC84413.1"
FT                   /translation="LTLNTDKQLTIDFDTTQDLPADTFSNDVTFEQWWSNQLENNRTVP
FT                   HYRIGGEFVEFTRQNAATVSIGIAHNRIEKEFLLRGAVGSGKSTGLPYHLSQRGKVLLL
FT                   EPTRPLAENVCRQLQGPPFNVSPTLQMRGLSSFGSTPITIMTSGFALHMYANNPDKISN
FT                   YDYIIFDECHIMEAPAMAFYCLLKEYNFDGKIIKVSATPPGRECEFSTQYPVDIHVCEN
FT                   LTQNQFVLELGTGSKADATKYGNNILVYVASYSDVDSLARALTEHHYSVIKVDGRTMKQ
FT                   NTTGIQTNGTDARKCFVVATNIIENGVTLDVDVVVDFGLKVSAELDVDNRAIMYRKVSI
FT                   SYGERIQRLGRVGRTKPGTIIRSGVTMKGLQEIPAMIATEAAFLCFAYGLKVITHNVST
FT                   THLAKCTVKQARTMMHFELSPFIMSELVKFDGSMHPQIHEKLKKYKLRDSVIMLRTNAV
FT                   PYSNVHNWLTVKDYNKIGCNLELGEYIKIPYFVRGVSEKLYSEIYDIVLKYGSTNCCGR
FT                   LSSACAGKVAYTLRTDPYSLPRTIAIINRLICEEHAKREHYNTMISNPSSSHAFSLSGI
FT                   VNMLASRYMKDHSKENIEKLTRVKDQL"
FT   mat_peptide     <1..>1809
FT                   /product="CI protein"
FT                   /note="ORF2"
XX
SQ   Sequence 1809 BP; 622 A; 317 C; 370 G; 500 T; 0 other;
     ttaacgttga atactgataa gcagctaacg atagactttg atacaacaca agatcttccg        60
     gctgacacat ttagtaatga tgtaactttt gagcaatggt ggtctaatca gttggagaat       120
     aacagaacag ttccacacta ccgcattgga ggcgaatttg tagagttcac acggcaaaac       180
     gcagcaacag ttagcatagg gatagcacat aatcgaattg agaaggaatt tctattgcgt       240
     ggagctgtgg gttcaggaaa atcaacagga ctgccgtatc atttgagtca acgaggaaaa       300
     gttctgttgt tggaaccaac tcgtcccttg gcagagaatg tttgcagaca attgcaggga       360
     cccccattta atgttagccc aactttgcaa atgaggggtt taagttcttt tggatccact       420
     ccaataacca taatgacatc aggattcgca ctacatatgt atgcaaacaa cccagataaa       480
     attagcaact acgattatat catttttgat gaatgtcata taatggaagc accagcaatg       540
     gctttttact gtttacttaa ggaatacaat ttcgatggta aaatcataaa agtttcggca       600
     actccaccag gaagagagtg cgaattctca actcagtatc cagtagatat acacgtttgt       660
     gaaaatctaa ctcaaaatca atttgttctg gaattgggca ctggttctaa agcagatgcg       720
     acgaaatatg gaaataacat tcttgtatat gttgcaagtt atagtgacgt agattcctta       780
     gcacgagcgc tgacagaaca tcattactca gtaataaaag ttgacggaag aacaatgaaa       840
     caaaacacaa caggaataca aacaaatgga actgatgcta gaaagtgttt cgtggtcgcc       900
     actaatatta ttgaaaatgg tgttacgcta gatgtcgatg tcgtagtgga tttcggcctc       960
     aaagtttcag ctgaactaga tgttgataat cgagcgataa tgtatcgaaa ggttagtata      1020
     tcgtatggtg aacgaattca gagacttgga agagttggac gaactaaacc tgggacaatt      1080
     attagatcag gtgtgacaat gaaaggatta caggagatcc cagctatgat agccacagaa      1140
     gcagcctttt tgtgttttgc atatggactc aaagttataa cccataatgt ttcaacaact      1200
     catttggcaa aatgtactgt aaaacaagca agaaccatga tgcatttcga actttcacct      1260
     ttcataatgt ctgagttagt taaatttgac ggttcaatgc atccccaaat acatgaaaag      1320
     ctcaagaaat ataaacttag ggattcagtt ataatgctca gaacaaatgc tgtaccttat      1380
     tcgaatgtcc ataattggtt gaccgttaag gattataata aaataggatg caatcttgaa      1440
     ttgggtgaat acataaagat tccatatttc gttagaggtg tatcagaaaa actgtacagt      1500
     gaaatatatg atatcgttct taaatatggc tcaacaaatt gttgtggtag attatcgagc      1560
     gcctgtgcag ggaaagtggc atacactctg agaaccgatc cttactcgtt accgcggacg      1620
     attgccatca taaatagatt aatctgtgaa gagcatgcaa agagagagca ttacaataca      1680
     atgatttcaa atccttcctc ttcacacgct ttttcattaa gtggaatagt caacatgctt      1740
     gcttcaagat atatgaaaga tcactcaaag gaaaatatcg aaaaactcac aagagtgaaa      1800
     gatcagctc                                                              1809
//