ID   AJ310111; SV 1; linear; genomic RNA; STD; VRL; 1839 BP.
XX
AC   AJ310111;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus partial genomic RNA for polyprotein gene, isolate
DE   Shandong
XX
KW   coat protein; NIb polymerase protein; polyprotein.
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1839
RA   Adams M.J.;
RT   ;
RL   Submitted (13-MAR-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s00705-001-0799-6.
RX   PUBMED; 12111432.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of potyviruses from sugarcane and maize in China";
RL   Arch. Virol. 147(6):1237-1246(2002).
XX
DR   MD5; fa208a25ad20bb392d46134cf327e54e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1839
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="maize"
FT                   /isolate="Shandong"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Shandong"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1584
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q8QXM5"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXM5"
FT                   /protein_id="CAC84100.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGVKEKEIDNCCRMFANG
FT                   DDLLLVVHPDFEHILDGFQNHFGNLGLNFEFTSRTRGKSELWFMSTRGIKCEGVYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLVQEIRKFYAWLLEMQPFANLAK
FT                   EGLAPYIAETALRNLYLGTGIKEEEIEKYFKQFAKDPPGYIEDYNEDVFHQSGTVDAGA
FT                   QGGGSGSGTTPPATGSGTGTRTPSTGAPAQGNTPPASGGSSGNNGGGQSGSNGTGGQAG
FT                   SSGAGGQRDKDVDAGSTGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDIS
FT                   NTRATKEEFDRWYDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase protein"
FT   mat_peptide     643..1581
FT                   /product="coat protein"
FT   3'UTR           1585..1839
XX
SQ   Sequence 1839 BP; 574 A; 383 C; 460 G; 422 T; 0 other;
     gggaacaata gtgggcagcc gtcaacagtt gtagacaaca cactcatggt gatattagca        60
     tttaattatg caatgttatc aagtggtgtt aaagaaaaag aaatagacaa ttgctgccga       120
     atgttcgcca atggtgatga tttgctactt gtagtgcatc cagatttcga acacatattg       180
     gacggatttc aaaatcactt tggaaaccta ggtctcaact ttgagtttac atcacgaaca       240
     agaggcaagt cagagttatg gttcatgtcc acacgaggta tcaaatgcga aggcgtctat       300
     ataccaaaac ttgagaaaga aagaatagtt gccatactcg agtgggatcg gtcaaactta       360
     cctgagcacc gtctcgaagc catttgtgca gccatggtag aggcatgggg atacccagac       420
     cttgtccaag agatacggaa attttatgcg tggcttctcg aaatgcaacc atttgcaaat       480
     ttagctaaag agggcttagc accatatatc gctgaaactg cactcagaaa tctgtatttg       540
     ggcacaggga tcaaggaaga agagattgag aaatatttca aacagtttgc caaagatccc       600
     cctggttata tagaagatta caacgaagat gttttccatc aatccggaac tgtggatgca       660
     ggagcccaag gagggggaag tggatctgga acaacgccac cagcaacagg tagtggaaca       720
     ggaacaagaa caccatctac tggagctcca gcacaaggca acacacctcc agcatcaggt       780
     ggatcatcag gaaacaatgg aggcggccaa tcaggttcaa acggcactgg aggccaagca       840
     ggctcaagcg gagcaggggg tcaaagagac aaagacgttg acgctggctc aacagggaag       900
     atatcagtgc caaagcttaa ggcaatgtcg aagaaaatgc gcctgccaaa ggcgaaagga       960
     aaagacgttt tacacttaga tttcctgtta acatataaac cacaacagca agatatatca      1020
     aacactagag caactaagga agagtttgat agatggtacg atgccataaa gaaggagtac      1080
     gaaattgatg acacacaaat gacagttgtc atgagtggtc tcatggtatg gtgcatcgaa      1140
     aatggttgct caccaaacat aaacggaaat tggacgatga tggacggaga cgaacaaagg      1200
     gtttttccat taaagccagt cattgagaac gcatctccaa ctttccgaca gataatgcat      1260
     cattttagtg atgcagctga agcgtatata gagtaccgaa actctacaga gcgatacatg      1320
     ccaagatacg gtcttcagcg aaatctcacc gactatagct tagcgcggta tgctttcgac      1380
     ttctatgaaa tgacttcgcg cacaccagct agagctaagg aagcccacat gcagatgaaa      1440
     gccgcagcag ttcgtggttc aaacacacgt ctgttcggtc tggacggaaa tgtcggcgag      1500
     actcaggaga atacagagag acacacagct ggcgacgtta gtcgcaacat gcactctctg      1560
     ttgggagtgc agcagcacca ctagtctcct ggaaaccctg tttgcagtac ctatagtata      1620
     ttactaaata gtatgttcgt gaggccttgc ctcgtgtgta tgtgaggttc tacctcgtat      1680
     ttactatttc agtatatgta cttttagcgt gaaccagtct gcaggacaca gggttggacc      1740
     cagtgtcttc tggtgtagcg tgtactagcg tcgagccaat ggacggacgg caccgggagt      1800
     ggttttacca ttggtgctgc gagtctcttg gtgagagac                             1839
//