ID AJ309022; SV 1; linear; genomic RNA; STD; VRL; 7564 BP. XX AC AJ309022; XX DT 04-JAN-2002 (Rel. 70, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Grapevine fleck virus complete genome, isolate MT48, genomic RNA XX KW coat protein; complete genome; cp gene; ORF3; ORF4; rep gene; replicase. XX OS Grapevine fleck virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Maculavirus. XX RN [1] RP 1-7564 RA Sabanadzovic S.; RT ; RL Submitted (29-MAR-2001) to the INSDC. RL Sabanadzovic S., Plant Protection, Istituto Agronomico Mediterraneo, Via RL Ceglie 9, 70010 Valenzano (BA), ITALY. XX RN [2] RX PUBMED; 11458008. RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N., Saldarelli P., Martelli G.P.; RT "Complete nucleotide sequence and genome organization of Grapevine fleck RT virus"; RL J. Gen. Virol. 82(Pt 8):2009-2015(2001). XX DR MD5; 6639cabbcb90184a9143a0ba9ad195a8. DR EuropePMC; PMC3650186; 24426260. XX FH Key Location/Qualifiers FH FT source 1..7564 FT /organism="Grapevine fleck virus" FT /isolate="MT48" FT /mol_type="genomic RNA" FT /country="Italy" FT /db_xref="taxon:103722" FT 5'UTR 1..291 FT CDS 292..6141 FT /gene="REP" FT /product="replicase" FT /db_xref="GOA:Q8UZB6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q8UZB6" FT /protein_id="CAC84400.1" FT /translation="MVLTLCFHSDRDHHFLSTLPLAEIRRLAPGGFSVFVPEDLLPHLS FT PSPSCPTPPLPRELTWSAACNPTNFPHLFRHHRPPPPCTRLTPRPPPPTPAPPSASTLP FT RVFHGGAPPAAFQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSAL FT NQAGIPATSYGHQSHPHPIHKTIETHLLHEHWANRATLPSTVMFMKRSKFDKLRVSNAA FT LVKSASNFLHLLNPILTARDADRYTHLPLPDTLPSTPLYFMHHSLMYFSPSQIAGLFLA FT APFLERLYASLVLPAESTIGSHPFFPSLYRYRTTGEHLHYVLEGNPSSSYTQPLTATQW FT LTTSSITAGDLHLTVTVLESWFSVHSILITRGVRPLELPRDIISLPSPDAVLLPNPSAF FT DIPLRSRLVPRDVCESLFVYVRAVRTLRTTDPAGFIRTQSNKAEFDWVTAEAWDHLAQF FT ALLTAPVRPNTYFLPLLSPLAVVRHWLFRKQRPIFATLTLLSASTAAAIPIAIARLRTH FT SVTQLTILGHHFTPPKILARLPVALKRLIPKRLLPHLPSHLRPPPSWSPVFTLTFSELP FT KARFLTFPISGQTHTLLRQLHVPAILFAPQRPSRPLIFAGLLIGTVPVLYGAYRWFVSR FT FDPQTVYNRYSDLLHRPTWHLTFEREPLSCFPTPFLPHPSSHPRRARRLPPLPPAPPLP FT PQPPPPPPPQPSPHPPLFPASIPSPPPRPSSPPPPATSPASTPALTPIPAPKTAPPLTF FT PSPTLVAEPDAPVTARPSPLPLAPSRPFSELYPGHYADHSGSFFLQQPLVASSVPYPAL FT DCLLVSCSAASGIPKEDLWATLCHIFPPSDLVSDLGLSTNHLTALAFTYQWLVTLRSGE FT LVQRHGLLSAPFAFEITHTPPVPPATVGHFALSAPLTPTSACLTGGAPSPVISGPKASA FT SLPRARFGPRPEAPRPPLTPPGFTPITEPTPATSPFALAALRFRLNRQPLPIRQVHAYS FT IALPRAKNLVSNLKNGFDGLVSSLPASDRTNLLPLIQALDHTADFPPARPPVGLIHIAG FT FAGCGKSYPIQQLLATQTFRHFRVVTPTTELRHEWKRALKLEGPSSWRVSTWETALAKR FT ASVLVIDEVYKLPRGYLDLALLADPTVEFVIILGDPLQGSYNPTNPDSSNHRLIPEEDH FT LRPFIDFYCLWTRRLPRLVADFFGVPTTNPTRGHLAFASLNTTQSPLLVPSDSMARALT FT AGGHRAITYAASQGSTYPAPVHIFLDRNSNLVTNHVALVALTRSRSGVHFRPRAQDLPR FT HPQHLFTAFYKYAIDLLAHEADPSKPRPTPVDVTLLFQQQLRGLTILRDPSFSRITGGA FT THAFLAHAPLFTNLHGLRPTTFPDNLPTAPTYLARSLPYHQTESYPTSALPHRVFPAST FT TDWSAADDHPRVNPTFVAETRLPLQSELAPTLPSQPEPSPTYHSPATFETVYPGVDGEA FT LARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQDPTLLHAS FT LAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPEPVPFDPVLFASCIAENDFA FT QLTSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLALMHDYLI FT LVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTPSVHLANDYTAFDQSQH FT GEAVVLEAWKMRRASIPEPFITLHVHVKTNIECQFGPLTCMRITGEPGTYDDNTDYNLA FT ILYTQYLLHRTPVLVSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVG FT PAGAVRAPRALFAKLAIALEDGSLPEKIASYVAEFSVGQSLGDSLWSLIPPELVIYQSA FT CFDLICRHASPQLKLALRLGEVPDWGSLLSQLKLRFLTRPLFALLDAHTRVMVRTHKAH FT LLPSGHALHPSTEPFY" FT CDS 6367..7059 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q8UZB5" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q8UZB5" FT /protein_id="CAC84401.1" FT /translation="MSLPADLLLGAISSLLRNPPTSDAASPSADQPAVSSSRSDSRLVS FT APLPAAPPAPTAIARNPRVSIHLPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRH FT ARLTSLEAFVQPTASSATYPQTVDLCWTIDSVTPARSEILSVFGAQRIAWGSVHFSAPI FT LLPAELSSLNPTIKDSVTYTDCPRLTCGFYRNDACVALGSSAPICGSILIRGVIECSAP FT INRPTPSS" FT CDS 6590..7519 FT /product="hypothetical protein" FT /function="unknown" FT /note="ORF3" FT /db_xref="GOA:Q8UZB4" FT /db_xref="UniProtKB/Swiss-Prot:Q8UZB4" FT /protein_id="CAC84402.1" FT /translation="MTSRAPSPPTPPCPSPPALKSSPSPVPTATPASPPLKPLSNPLPP FT PPPTPRPSTSAGPSTPLPPPALRSSPSSALNASRGAPSTSPPPSSSPPSSPASTPPSRT FT PSPTPTAPASPVASTAMTPASPSVPPPPSAAPSSSAALSSAPPPSTAPLPRHEPRPPPP FT LPPPLQPPPGVRVPRSVAFPLPLARELPPLRLPPAPYLHPLLARLAPLRLRPPPDLPSP FT PLSPPLSPPLSPISPLHAPAPPPHPDPVLLPALSLAISRAAPDLLRLLSLLSPPSLFLL FT FTLLSIHFSPFPIFILLSLLLLLQFPRT" FT CDS 7056..7529 FT /product="hypothetical protein" FT /function="unknown" FT /note="ORF4" FT /db_xref="UniProtKB/Swiss-Prot:Q8UZB3" FT /protein_id="CAC84403.1" FT /translation="MNRGPPLRSRPPSSPPPASAFPGPSPFPSPSPANSLPSASPPPPT FT CTPSSPVSRPFASARLRTSHPPRCPHRSAPPSAPSPPFTPPHPLPTPTPSSSPRSPWLS FT LAPLPTSSASLASFPPPPSSFSSPSSPSTSPLSPSSSSFPSSSSFSFLVPSNS" XX SQ Sequence 7564 BP; 1054 A; 3774 C; 1236 G; 1500 T; 0 other; gcacattagt actgaccacc agcccgactt tgacgccacc ctgtccaagt ccggcccgtg 60 ctcactcttt tgtttttctt tgttcttttc ccctgctccc acgttcgacg acctcgcggc 120 cgtcctcctc gcttcgtgct ctgcatcctt taacttcctc cccctcttcc tcctcgccct 180 ttcctttctc atccacctcc ctcccaacct ctcttcctcc cttcactctc ttcttcttgc 240 ttttcccttt ctcttcttct ttcttcctcc tgctctcccc atcctcccgc catggtgctc 300 acgctctgct tccactcgga ccgtgaccat cacttcctct ccaccctccc cctcgccgag 360 atcagacgtc tcgcgccagg cggcttctcc gtcttcgtcc ctgaagacct cctcccccac 420 ctctccccct ccccctcctg ccccaccccc ccccttcccc gcgagctcac ctggagcgcc 480 gcttgcaacc ccaccaactt cccccatctc tttcgccacc accgcccacc ccccccctgc 540 acccgcctta ccccccgccc cccccccccc actcctgccc ctccctcagc ctccaccttg 600 ccccgtgtct tccacggcgg cgccccccca gccgccttcc aacccgcgat cgacttcctt 660 cacaacacaa tccagaagga tacgatcgcc tcctccatca ttgccgccct caacccttcc 720 ctcacctcct ccctcaccct ctacccctac gcgctccccc cgcgctggcc ctccgccctc 780 aaccaagccg gcatccccgc cacttcctac ggccaccaat cccaccccca cccaatccac 840 aagaccattg aaacccatct cctccatgag cattgggcca accgtgcgac tctcccgtcc 900 acggtcatgt tcatgaagag gtcgaagttc gacaagctcc gcgtctccaa cgcggctctc 960 gtcaaatcgg cctcaaactt cctccacctc ctcaacccca tcctcaccgc ccgggacgcc 1020 gaccggtaca cccacctccc cctccccgac accctcccct ccacccctct ctacttcatg 1080 catcattccc tcatgtactt ctcgcccagc caaattgccg ggctcttcct cgccgccccc 1140 ttcctcgaga ggctctacgc ctctctcgtc ctcccggccg aatccaccat cggcagccac 1200 cccttcttcc cctctctgta ccgctaccgc accaccggcg agcacctcca ttacgtgctc 1260 gaaggcaacc catcctcctc ctacacccag cccctcaccg ccacccagtg gctcaccacc 1320 tcctccatca ccgccggcga cctccacctc accgtcaccg tcctcgagtc atggttctcc 1380 gtgcactcaa tcctcatcac ccgcggtgtt cgccccctcg agctgccccg cgacatcatc 1440 tccctgccct cccccgacgc cgtcctcctc cccaacccct ctgccttcga catccccctc 1500 cgctcccggc tcgttccccg cgacgtctgc gaatcgctct tcgtttacgt ccgcgccgtc 1560 cgtaccctcc gcaccaccga ccccgccggc ttcattcgaa cccagtccaa caaggctgag 1620 ttcgactggg tcaccgccga ggcctgggac cacctcgccc agttcgccct cctaaccgcc 1680 cccgtccgcc ccaacaccta cttccttcct ctcctctccc cgctcgccgt cgtccgccat 1740 tggctctttc gcaagcaaag gccaatcttc gccaccctca ccctcctctc cgcgtcaacc 1800 gccgccgcca tccccatcgc catcgcccgc ctccgcaccc attcggtcac ccagctcacc 1860 atcctcggcc accatttcac cccccccaag atcctcgctc gccttcccgt cgccctcaag 1920 cgcttaatcc caaagcgcct gctcccccac ctcccatccc acctccgccc ccccccttcc 1980 tggtccccgg tcttcaccct caccttctcc gagctcccca aagcccggtt cctcaccttc 2040 cccatctccg gccaaaccca caccctcctc cgacagctcc atgtccctgc catcctcttc 2100 gccccccaac gccccagccg ccccctcatc ttcgcgggcc tgctcattgg gactgtccct 2160 gttctgtacg gggcctaccg atggttcgtc tcccgcttcg acccccagac ggtgtacaac 2220 cgttactctg accttcttca ccgccccaca tggcacctca ccttcgagcg tgagcccctc 2280 agctgcttcc caaccccctt tctgccccac cccagctccc accccagacg agcgcgtcgg 2340 ctcccccccc tcccgcccgc cccacccctt ccaccccagc cgccaccgcc cccccccccc 2400 caaccatccc cacacccccc cctcttcccc gcttcaatcc cgtcgcctcc gccccgcccg 2460 tcctcaccgc ccccccccgc cacctccccc gcctccaccc cggccctcac tcccatcccg 2520 gcgccgaaga ccgccccacc ccttaccttc ccctccccca ccctcgtcgc tgagcccgac 2580 gcccccgtca ccgcccgccc cagtcctctt cccctcgccc ccagccgccc cttctccgag 2640 ctctaccccg gccactacgc cgatcattca ggctccttct tcctccagca gcccctcgtc 2700 gcctcctccg tcccctaccc cgccctcgac tgccttctgg tctcctgctc cgctgccagc 2760 ggaatcccaa aggaagacct ctgggccacc ctttgccaca tctttccccc cagtgatctc 2820 gtctccgacc ttggcctctc caccaaccat ctcaccgccc tcgccttcac ctaccagtgg 2880 ctggtcactc tccgctcagg agagttggtc cagcgccacg gcctcctctc cgcccctttc 2940 gcctttgaga tcacccacac cccacccgtt cctcccgcca ccgtcgggca cttcgccctc 3000 tccgcccccc tcacccccac ctccgcttgc ctcaccgggg gcgccccttc cccagtcatc 3060 tccggcccca aggcctccgc ctccctcccc cgcgcccgct ttgggcctcg ccctgaagct 3120 ccccggcctc ccctgacccc ccctggcttc actcccatca ccgagcccac ccctgccaca 3180 tccccgttcg ccctcgccgc cctccgcttc cggctcaacc gccagcccct cccgatccgc 3240 caagtccacg cctactccat cgccctccct cgcgccaaaa acctcgtctc caatctcaag 3300 aacggattcg acggtctcgt ctcctccctc cccgcctccg accgcaccaa cctcctcccc 3360 ctcatccaag cccttgatca caccgccgac ttccctcccg cccgcccccc cgtcggcctc 3420 atccacatcg ccggcttcgc tggctgcggt aagagctacc ccatccagca actgctcgcc 3480 acccagacct tccgccactt ccgcgtcgtc acccccacca ctgagcttcg ccacgaatgg 3540 aaacgtgcgc tcaagctcga aggcccctcc tcttggcgcg tctccacctg ggagacagcc 3600 ctcgcgaagc gtgcttcggt ccttgtcatc gacgaggtct acaagctccc tcgcgggtac 3660 ctcgaccttg cccttctcgc cgaccccacc gtcgagttcg tcatcatcct cggcgacccc 3720 ctccaaggat cctacaaccc caccaacccc gactcttcca accaccgcct catccccgaa 3780 gaagaccacc tccgcccgtt catcgacttc tattgtctgt ggactcgccg cctcccccgc 3840 ctcgtcgccg acttcttcgg cgtacccacc accaacccca ctcgcggtca cctcgccttc 3900 gcctccctca acaccactca atcccctctc ctcgtcccct ccgactccat ggcccgagcc 3960 ctcactgctg gcggccaccg cgccatcacc tacgccgcct cccaaggttc cacttacccc 4020 gcccccgtcc acatcttcct tgaccgcaat tctaacctcg tcaccaacca tgtcgccctc 4080 gtcgccctta cccgttcccg ctctggcgtc cacttccgcc cccgcgccca ggacctccct 4140 cgccaccccc agcacctctt caccgcgttc tacaagtacg cgatcgacct cctcgcccac 4200 gaagccgatc cctccaagcc ccgccccacc cccgtcgacg tcacgctgct cttccaacag 4260 cagctccgcg gcctcaccat cctccgtgac ccctccttct cccgcatcac cggtggcgcc 4320 acccacgcct tcctcgccca cgccccactc ttcaccaacc tccacggcct ccgccccacc 4380 accttcccgg acaaccttcc caccgccccc acctacctgg cccgttccct cccctaccac 4440 cagaccgagt cctaccccac ctcagccctc ccgcaccgtg tcttccccgc ctccaccacc 4500 gactggtcag ccgccgacga ccatccccga gtcaacccca ccttcgtcgc cgagacccgc 4560 ctccccctcc agagtgaact cgcccccacc ctcccatccc aaccagaacc ttccccgacc 4620 taccactccc ccgccacctt cgagaccgtc taccctggag tggacggcga agccctcgcc 4680 cgcaccttcc ttgccgccac cgacccgttg gagctggaga tcttcttccg caacaactgg 4740 tccaaccagt tccccttcat caaccgcccc gacaccgtag cctgcaaccc tctcaccctc 4800 gtcgccccca cccacaacca aaagcaagac cccaccctcc tccacgcttc cctcgccaag 4860 cgtctccgct tccgcgactc cacagccccc tacaccatca ccgccaagga tcaagcctta 4920 ggctacatcc tttaccactc cctccagcgc gcctactgcc gttcccccga gcccgtcccc 4980 ttcgacccag tcctcttcgc gtcctgcatc gcggagaacg acttcgccca gctcacctcc 5040 aaaacccaag ccaccatcca agccaacgcc ttccgctccg acccggattg gcgtcacacc 5100 ttcgtccgca tcttctcgaa gacccagcac aaggtcaacg agaactctct tttcacctct 5160 tggaaagcct gccagaccct cgccctcatg catgattact tgatcctggt cctcggccca 5220 gtgaaaaagt atcagcgcat cctcgacagc cgagaccgcc ccgcccatct ctacatccac 5280 gccggccaga ccccccacca actttccgag tggtgccaaa accacctcac tccctccgtc 5340 cacctcgcca atgactacac ggccttcgac caatcgcagc acggtgaagc cgtcgtgctc 5400 gaggcttgga agatgcgccg cgcctccatt cctgaacctt tcatcaccct ccacgtccac 5460 gtgaagacca acatcgaatg ccaatttggc cctctcacgt gcatgcgcat caccggtgaa 5520 ccaggcacct acgacgacaa caccgactac aacctggcca tcctctacac ccagtacctc 5580 ctccaccgca cccccgtcct tgtgtccggc gatgactccc tcgtcgaccg cgtccccccc 5640 atgaaccctt cttggcctgc cctcgccccc ctcttcgccc tcaagcccaa acccgagacc 5700 tcccccttcg gccttttctg cggttacttc gtcggccccg ccggcgccgt ccgcgccccc 5760 cgcgcccttt tcgccaagct cgcgatcgcc ctcgaggacg gctctctgcc cgagaaaata 5820 gcgtcttacg tcgctgagtt ctcggtcggt cagtccctcg gcgactccct ttggtccctc 5880 atcccccctg aactggtcat ctaccagtca gcctgctttg acctcatctg ccgccacgcc 5940 tctccccagc taaagctcgc cctccgtctc ggtgaggtcc ccgactgggg gtctctcctc 6000 tcccagctca agctccgctt cctcacccgc cccctcttcg ccctcctcga cgctcacact 6060 cgcgtcatgg tccgcaccca caaggctcac ctcctcccct ccggccacgc cctccacccc 6120 tccaccgagc cattctacta gcctacttgc gtgttgttgt tccaatgaca ccacgtcgcc 6180 cctcctcgcc atcctcgtcc ttctcatcgt cgttctagcc tcagccctct tctgcgccct 6240 cttcgccctc taccgtgtcg ccatccacca gaccgtcctc tcctccccgt ccttcgctcc 6300 cccctccccc gtcccgctct agcatccccc ccctccgcat ccccaagccc ctctccgcct 6360 cgtctgatga gcctccccgc tgacctcctc cttggcgcca tctcctccct cctccgcaat 6420 ccccccacgt ctgatgccgc ctctccgtct gctgaccagc ctgctgtctc tagctctcgc 6480 tctgactctc gcttggtcag cgctccgctc cctgctgcgc cacccgcccc gaccgctatt 6540 gcccgcaacc ctcgtgtaag catccatctc cccttccagt tcctgtggta tgacatcacg 6600 ggcaccgagt cctcctacac ctccctgtcc atcgcctccc gccctgaagt cgtcaccgtc 6660 gcccgtccct accgccacgc ccgcctcacc tcccttgaag cctttgtcca acccactgcc 6720 tcctccgcca cctaccccca gaccgtcgac ctctgctgga ccatcgactc cgttaccccc 6780 gcccgctctg agatcctctc cgtcttcggc gctcaacgca tcgcgtgggg ctccgtccac 6840 ttctccgccc ccatcctcct ccccgccgag ctctccagcc tcaaccccac catcaaggac 6900 tccgtcacct acaccgactg cccccgcctc acctgtggct tctaccgcaa tgacgcctgc 6960 gtcgccctcg gttcctccgc ccccatctgc ggctccatcc tcatccgcgg cgttatcgag 7020 tgctccgccc ccatcaaccg ccccactccc tcgtcatgaa ccgaggcccc cccctccgct 7080 cccgcccccc ctccagcccc cccccggcgt ccgcgttccc cggtccgtcg cctttcccct 7140 ccccctcgcc cgcgaactcc ctcccctccg cctccccccc gccccctacc tgcaccccct 7200 cctcgcccgt ctcgcgcccc ttcgcctccg cccgcctccg gacctcccat cccccccgct 7260 gtccccaccg ctcagccccc ccctcagccc catctccccc cttcacgccc ccgcaccccc 7320 tccccacccc gaccccgtcc tcctccccgc gctctccctg gctatctctc gcgccgctcc 7380 cgacctcctc cgcctcctta gcctcctttc ccccccctcc ctcttccttc tcttcaccct 7440 cctctccatc cacttctccc ctttccccat cttcatcctc ctttccctcc tcctcctcct 7500 tcagtttcct cgtacctagc aatagctaga ggtagccggt ttctcactcc ggcctttctt 7560 tctg 7564 //