ID AJ308228; SV 1; linear; genomic RNA; STD; VRL; 6357 BP. XX AC AJ308228; XX DT 28-AUG-2001 (Rel. 68, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pepper Mild Mottle Virus proviral gene for 183 kDa protein, gene for 126 DE kDa protein, gene for 28 kDa protein and cp gene, genomic RNA XX KW 126 kDa protein; 183kDa protein; 28 Kda protein; coat protein; cp gene. XX OS Pepper mild mottle virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6357 RA Velasco L.; RT ; RL Submitted (23-AUG-2001) to the INSDC. RL Velasco L., Unidad de Virologia, Centro de Investigacion y Formacion, PO RL Box, 91 El Ejido, Almeria E-04700, SPAIN. XX RN [2] RX DOI; 10.1016/S0166-0934(02)00144-1. RX PUBMED; 12367738. RA Velasco L., Janssen D., Ruiz-Garcia L., Segundo E., Cuadrado I.M.; RT "The complete nucleotide sequence and development of a differential RT detection assay for a pepper mild mottle virus (PMMoV) isolate that RT overcomes L3 resistance in pepper"; RL J. Virol. Methods 106(1):135-140(2002). XX DR MD5; f2b88640319103e852c1e8471dec6a7e. DR EuropePMC; PMC5834335; 29496844. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01088; TLS-PK5. XX FH Key Location/Qualifiers FH FT source 1..6357 FT /organism="Pepper mild mottle virus" FT /strain="Ia" FT /mol_type="genomic RNA" FT /proviral FT /db_xref="taxon:12239" FT CDS 70..4908 FT /transl_except=(pos:3421..3423,aa:Tyr) FT /product="183 kDa protein" FT /db_xref="GOA:Q91E35" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91E35" FT /protein_id="CAC59955.1" FT /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDRR FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSVELYLSKLAQKKKVIPPYQ FT KPVFDKYTDDPQSVVCSKPFQHCDGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQTEGKRFARKEVMVSKDF FT VYTVLNHIRTYQSKALTYTNVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISVLKDSDKFDVD FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTITSKEEGSLK FT IVSSDVGESSIKEVVRKSEISMLGLTGDTVSDEFQRSTEIESLQQFHMVSTETIIRKQM FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK FT WLVKPLSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRA FT NNSGLIVATNENVRTVDSFLMNYGRGQCQFKRLFLDEGLMLHPGCVNFLVGMSLCSEAF FT IYGDTQQIPYINRVATFPYPKHLSQLEVDVVETRRTTLRCPADITFFLNQRYEGQVMCA FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF FT EDVSLVRLTPTPVGIISRQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL FT DMYKVDVSTQYQLQIESVYKGVNLFVAAPKTGDVSDMQYYYDKCLPGNSTILNEYDAVT FT MQIRDNSLNVKDCTLDMSKSVPLPRESGTTLKPVIRTAAEKPRKPGLLENLVAMIKRNF FT NSPELVGVVDIEDTASLVVDKFFDAYIIKEKKKPKNIPLLSRASLERWIGKQEKSTIGQ FT LADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYHSKKINALFGPVFSEL FT TRQLLEIIDSSRFMFYTRKTPTQIEEFFSDLDSDVPMDILELDISKYDKSQNEFHCAVE FT YEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAAC FT LSSMLPMERLIKGAFCGDDSILYFPKGTDFPDIQQGANLLWNFEAKLFRKRYGYFCGRY FT IIHHDRGCIVYYDPLKLISKLGAKHIKNREHLEEFRTSLCDVAGSLNNCAYYTHLDDAV FT GEVIKTAPPGSFVYRALVKYLCDKRLFQTLFVE" FT CDS 70..3423 FT /product="126 kDa protein" FT /db_xref="GOA:Q91E34" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91E34" FT /protein_id="CAC59956.1" FT /translation="MAYTQQATNAALASTLRGNNPLVNDLANRRLYESAVEQCNAHDRR FT PKVNFLRSISEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGST FT TYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNAQKDSVELYLSKLAQKKKVIPPYQ FT KPVFDKYTDDPQSVVCSKPFQHCDGVSHCTDKVYAVALHSLYDIPADEFGAALLRRNVH FT VCYAAFHFSENLLLEDSYVSLDDIGAFFSREGDMLNFSFVAESTLNYTHSYSNVLKYVC FT KTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLYRGVYHRGVDKEQFYSAMEDAWH FT YKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIVPLFDVSLQTEGKRFARKEVMVSKDF FT VYTVLNHIRTYQSKALTYTNVLSFVESIRSRVIINGVTARSEWDVDKALLQSLSMTFFL FT QTKLAMLKDDLVVQKFQVHSKSLTEYVWDEITAAFHNCFPTIKERLINKKLITVSEKAL FT EIKVPDLYVTFHDRLVKEYKSSVEMPVLDVKKSLEEAEVMYNALSEISVLKDSDKFDVD FT VFSRMCNTLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQPTITSKEEGSLK FT IVSSDVGESSIKEVVRKSEISMLGLTGDTVSDEFQRSTEIESLQQFHMVSTETIIRKQM FT HAMVYTGPLKVQQCKNYLDSLVASLSAAVSNLKKIIKDTAAIDLETKEKFGVYDVCLKK FT WLVKPLSKGHAWGVVMDSDYKCFVALLTYDGENIVCGETWRRVAVSSESLVYSDMGKIR FT AIRSVLKDGEPHISSAKVTLVDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRA FT NNSGLIVATNENVRTVDSFLMNYGRGQCQFKRLFLDEGLMLHPGCVNFLVGMSLCSEAF FT IYGDTQQIPYINRVATFPYPKHLSQLEVDVVETRRTTLRCPADITFFLNQRYEGQVMCA FT SSVTRSVSHEVIQGAAVMNPVSKPLKGKVITFTQSDKSLLLSRGYEDVHTVHEVQGETF FT EDVSLVRLTPTPVGIISRQSPHLLVSLSRHTRSIKYYTVVLDAVVSVLRDLECVSSYLL FT DMYKVDVSTQ" FT CDS 4909..5682 FT /product="28 kDa protein" FT /function="cell to cell spreading of the virus" FT /db_xref="GOA:Q91E33" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q91E33" FT /protein_id="CAC59957.1" FT /translation="MALVVKDDVKISEFINLSTAEKFLPAVMTSVKTVRISKVDKVIAM FT ENDSLSDVDLLKGVKLVKDGYVCLAGLVVSGEWNLPDNCRGGVSVCLVDKRMQRDDEAT FT LGSYRTSAAKKRFAFKLIPNYSITTADAERNVWQVLVNIRGVAMEKGFCPLSLEFVSVC FT IVHKSNIKLGLREKITSVSEGGPVELTEAVVDEFIESVPMADRLRKFRNQAKKRSNKYV FT SKRNDNMGLNKERKLVDKVRIGLNSESSDAESSSF" FT CDS 5685..6158 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q91E32" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q91E32" FT /protein_id="CAC59958.1" FT /translation="MAYTVTSANQLVYLGSVWADPLELQNLCTSALGNQFQTQQARTTV FT QQQFSDVWKTIPTATIRFPATGFKVFRYNAVLDSLVSALLGAFDTRNRIIEVENPQNPT FT TAETLDATRRVDDATVAIRASISNLMNELARGTGNYNQALFESVSGLTWATTP" XX SQ Sequence 6357 BP; 1866 A; 1173 C; 1526 G; 1792 T; 0 other; gtaaattttt cacaatttaa caacaacaac ataaacaaca aacaacatta caaacaaaat 60 acaactacaa tggcttacac acaacaagct accaacgccg cattagcaag tactctccga 120 gggaacaatc ccttggtgaa tgatcttgct aatcggagac tgtatgaatc agcggtcgaa 180 caatgcaatg cacatgaccg caggcccaag gttaattttt taaggtcaat aagcgaagag 240 cagacgctta ttgcaactaa ggcctacccc gagttccaaa ttacgttcta caacacgcag 300 aacgctgtgc acagtctcgc aggtggactt cggtctttgg agctcgaata cttaatgatg 360 cagatcccct atggttcaac gacatacgat atcgggggaa attttgctgc tcacatgttt 420 aaaggtcgtg actacgttca ttgctgcatg cctaatatgg acttacgtga tgttatgcgt 480 cacaatgctc aaaaggatag cgttgaactg tacctttcaa agcttgcgca gaagaaaaaa 540 gtaataccgc cgtatcaaaa gccagtcttt gataaataca cggatgatcc gcagtcagtg 600 gtgtgctcga aacctttcca gcactgcgat ggcgtttcac actgcacgga taaagtatac 660 gctgttgcct tgcacagttt gtacgacatt ccggcagatg agtttggtgc agcacttctg 720 aggagaaatg ttcatgtctg ttatgctgcc ttccactttt ctgagaatct tcttttagaa 780 gattcgtatg ttagtcttga cgacataggc gccttcttct cgagagaggg tgatatgttg 840 aatttttctt ttgtagcaga gagtacttta aattatactc attcctacag taatgtactt 900 aagtatgtgt gtaagactta cttccccgct tctagtagag aagtgtacat gaaggagttt 960 ttagtaacta gagtaaatac ttggttttgt aagttttcaa ggttagatac cttcgtacta 1020 tatagaggtg tgtaccacag aggtgtagac aaggagcaat tttacagtgc aatggaagat 1080 gcttggcatt acaaaaagac tttggcgatg atgaatagcg aaaggatcct cctagaggat 1140 tcgtcgtctg ttaattattg gtttccaaag atgaaagata tggtaatagt acctttgttc 1200 gatgtgtctt tacagaccga ggggaaaagg tttgcaagaa aggaggtcat ggtcagcaag 1260 gactttgttt ataccgtgct taatcatatt cgtacatacc agtcgaaagc gcttacttac 1320 accaatgtat tatcgttcgt tgagtcgata agatcaagag tgataattaa tggggtgact 1380 gcgcgctcag agtgggatgt agataaggct ttgttgcagt ctctgtcaat gacttttttc 1440 ttgcagacta aattggccat gctcaaggat gacctcgtgg tccaaaaatt ccaagtgcat 1500 tccaaatcgc tcaccgaata tgtctgggat gagattacag ccgcctttca caattgtttt 1560 cctacgatca aggagaggtt gattaacaag aaactcataa ctgtttcgga aaaggctctt 1620 gaaattaagg tacccgactt gtatgtgact ttccacgata gattggttaa ggagtacaag 1680 tcttcagtgg aaatgccggt gctggacgtt aaaaagagtt tggaagaagc ggaagtgatg 1740 tacaatgctt tgtcggaaat ctcagttctt aaggatagtg acaagtttga tgtcgatgtt 1800 ttttcccgga tgtgtaacac tttaggtgta gatccattgg tggcagcaaa ggtaatggta 1860 gccgtggttt cgaatgagag tggtttgacc ttaacgtttg agaggcctac cgaagcaaat 1920 gtcgcacttg cattgcaacc gacaattaca tcaaaggagg aaggttcatt aaagattgta 1980 tcgtcagatg taggtgagtc ctcgatcaag gaagtggtcc ggaaatcgga gatttctatg 2040 ctgggtctaa caggcgacac agtgtccgat gagttccaaa gaagtacaga aattgaatca 2100 ttgcagcagt tccatatggt atccacagag acgattatcc gtaaacagat gcatgcgatg 2160 gtgtatactg gtccgctaaa agttcaacaa tgcaagaact atttagacag cctagtagcc 2220 tcgctctctg ctgcggtgtc aaacctgaag aagataatca aggacacagc tgcgatagat 2280 ctcgagacta aggaaaaatt tggagtctac gacgtgtgcc ttaagaaatg gttagtgaaa 2340 cctctatcca aaggacacgc ttggggtgtg gtgatggact cggactacaa gtgttttgta 2400 gcgcttctta catacgatgg tgaaaacatt gtgtgtggag agacatggcg tagagtcgca 2460 gtgagctccg aatctttggt gtattcagat atggggaaga taagagctat acgctcagtg 2520 ctcaaggacg gtgaacccca tataagcagt gcaaaggtta cacttgttga cggtgttcct 2580 ggttgcggta agacaaagga gattctttcg agggtcaact ttgacgaaga tttggtttta 2640 gtaccgggaa aacaggctgc cgaaatgata agaagaaggg caaacaattc tggtttaatt 2700 gtggcgacta acgagaacgt aaggacagta gactctttct taatgaatta tggtcgaggt 2760 cagtgccagt tcaaaaggct gtttctggat gaaggtctga tgttacaccc tggttgcgtt 2820 aattttctgg ttggcatgtc tctgtgctcc gaggctttta tttatggaga cacccaacag 2880 attccttaca tcaacagagt tgcaactttt ccctatccta agcatctgag tcaactcgag 2940 gtcgatgttg ttgaaactcg cagaacaact ctgcggtgtc cagcggatat caccttcttc 3000 ttgaatcaga ggtacgaggg gcaagtgatg tgcgcgtcaa gcgttacacg ttctgtatcg 3060 cacgaagtta ttcaaggtgc agcagtaatg aatccagtgt ctaaaccact caaagggaag 3120 gtgattacat tcactcaatc tgacaaatca ttgctgctct caaggggtta cgaagatgtg 3180 cacaccgttc atgaggtgca aggtgaaacg tttgaagatg tctcactggt aaggctgacg 3240 ccaacacctg tgggaataat ctcaaggcag agtccgcacc tgttagtctc attgtctagg 3300 catacaaggt cgatcaagta ttacactgtt gtgctagatg cagtcgtttc agtgctcaga 3360 gatctggagt gtgtgagtag ttacctgtta gatatgtaca aagtcgatgt gtcaactcaa 3420 tagcaattac agatagaatc ggtgtacaaa ggtgttaacc ttttcgtcgc agccccaaaa 3480 acaggagatg tttctgacat gcaatattat tatgataagt gtttgccggg aaacagcact 3540 atactcaatg agtatgatgc cgtaactatg caaatacgag ataatagttt gaatgtcaaa 3600 gattgcacgt tggatatgtc gaaatcagta cctcttccga gagaatctgg gacgacattg 3660 aaacctgtga ttaggactgc tgctgaaaaa ccccggaaac ccggattgtt ggaaaacttg 3720 gtcgcaatga tcaaaagaaa tttcaactct cccgaattag taggggtcgt cgacatcgaa 3780 gacaccgctt ctttagtagt agataagttt tttgatgcat acattattaa agaaaagaaa 3840 aaaccaaaaa atatacctct gctttcaagg gcgagtttgg aaagatggat cggaaagcaa 3900 gaaaagtcga cgattggcca attggccgac tttgacttta ttgaccttcc ggccgttgat 3960 caatataggc acatgatcaa gcagcagccg aaacagcgtt tggatcttag tattcaaact 4020 gagtacccgg ctttgcaaac gattgtgtat cacagcaaga agatcaatgc actctttggt 4080 cctgtatttt cagaattaac aagacaactg ctagagataa tcgacagttc gagatttatg 4140 ttttatacaa ggaaaacgcc tacacagatc gaagaatttt tctcagatct ggactctgat 4200 gtacctatgg atatattaga gctagacatt tccaagtatg acaaatcaca gaacgaattc 4260 cactgtgcag tcgagtatga gatctggaaa agattaggct tagatgactt cttggccgaa 4320 gtttggaaac atgggcatcg gaagacgacg ttgaaagact acacagctgg aataaagacg 4380 tgtttgtggt atcaaaggaa aagcggtgat gtcaccacat tcattggaaa cacaatcatt 4440 attgctgcat gtctgtcctc tatgttaccg atggaaagat taattaaagg tgctttttgc 4500 ggtgatgata gtatactata cttccctaag ggcactgact tccctgatat tcaacaaggt 4560 gcgaaccttc tctggaattt tgaagccaag ttgtttagga agaggtatgg ttacttttgt 4620 ggtaggtaca taattcacca cgacagaggt tgtattgttt attatgaccc tctcaaattg 4680 atctcgaaac tcggtgcgaa acacatcaag aatagagaac acttggagga atttaggacc 4740 tctctttgtg atgttgctgg gtcgttgaac aattgtgcgt actacacaca tttggacgac 4800 gctgttggtg aggttattaa gaccgcacct cctggttcgt ttgtttacag agcattagtt 4860 aagtatttgt gtgataaaag gttatttcaa acattgtttg tagagtaaat ggcgttagta 4920 gtcaaggatg acgttaagat ttccgagttc atcaatttgt ctaccgctga gaagttctta 4980 cccgctgtta tgacctcggt caagacggta cgaatttcga aagttgacaa agtgattgca 5040 atggaaaacg attcgttatc tgatgtagat ttgcttaaag gtgtgaagct tgttaaagat 5100 ggttatgtgt gtttagcagg gttggttgtg tccggggagt ggaacctgcc ggacaactgc 5160 agaggcggag taagcgtttg tttggttgat aagagaatgc aaagagatga cgaagcaaca 5220 cttggttctt atagaactag tgcggctaag aaacgatttg ctttcaaatt gatcccgaat 5280 tacagcatta ctaccgccga tgctgagaga aatgtttggc aagttttagt taatattaga 5340 ggtgttgcca tggaaaaggg tttttgtcct ttatctctgg agtttgtctc agtttgtatt 5400 gtacataaat ccaacataaa attaggcttg agagagaaaa ttactagtgt gtcagaagga 5460 ggacccgttg aacttacaga agcagttgtt gatgagttca tcgaatcagt tccaatggct 5520 gacagattac gtaaatttcg caatcaagct aagaaaagaa gcaataaata tgtaagtaag 5580 agaaatgata atatgggttt gaataaggag aggaagctgg ttgacaaggt tagaattggg 5640 ttgaactcgg agtcgtcaga cgccgagtca tcttcgtttt aactatggca tacacagtta 5700 ccagtgctaa tcaattagtg tatttaggtt ctgtatgggc cgatccatta gagttacaaa 5760 atttgtgtac ttctgcgtta ggtaatcagt ttcaaacaca acaggctaga actactgtcc 5820 aacagcagtt ctctgacgtg tggaagacta ttccgaccgc tacaattaga tttcctgcta 5880 ctggtttcaa agtttttcga tataatgccg tgctagattc tctagtgtcg gcacttctcg 5940 gagcctttga tactaggaat aggataatag aagttgaaaa tccgcaaaat cctactactg 6000 ctgagacgct cgatgcgacg aggcgagtag atgatgctac ggtggctatt agggccagta 6060 ttagtaacct catgaatgag ttagctcgag gcacgggaaa ttacaatcaa gctctgttcg 6120 agagcgtgag tggactcacg tgggctacaa ctccttaaac atgatggtta aaataagttg 6180 gacgaacatt aaacgtccgt ggcgagtacg ataactcgta gtgtttttcc ctccacttaa 6240 atcgaagggt tgtcgttagg atggaacgca attaaataca tgtgtgacgt gtatttgcga 6300 acgacgtaat tatttttcag gggttcgaat cccccccgaa ccgcgggtag cggccca 6357 //