ID   AJ307040; SV 1; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   AJ307040;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Turnip mosaic virus genomic RNA for partial viral polyprotein, isolate
DE   Jinhua R6
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (09-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Variation between Turnip mosaic virus isolates in Zhejiang province, China
RT   and evidence for recombination";
RL   J. Phytopathol. 150:142-145(2002).
XX
DR   MD5; a974376325c3d7cac99794c4c30d11b8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /isolate="Jinhua R6"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1500
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q8QXK1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXK1"
FT                   /protein_id="CAC85181.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLRKSGIPNELRDSLIRFFVNG
FT                   DDMLLGVHPKYEYVLDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPYSSLAQ
FT                   EGKASYIAETALRKLYLDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTE
FT                   EQKQAEKERKERERSEKEREKQRQLALKKGKNAAQEEGERDNEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..633
FT                   /product="NIb protein"
FT   mat_peptide     634..1497
FT                   /product="coat protein"
FT   3'UTR           1501..1709
XX
SQ   Sequence 1709 BP; 541 A; 341 C; 430 G; 397 T; 0 other;
     gggaataata gtgggcaacc gtcaacagtc gtggacaaca cgctcatggt catattagca        60
     gtcaactact cactcaggaa gagtggaatc ccaaatgaat tgcgtgatag cctcatcagg       120
     tttttcgtca atggagatga tatgctgcta ggcgtacacc caaagtacga gtatgtcctt       180
     gacactatgg cggataattt ccgtgaactg ggcttgaagt ataccttcga ttcaagaacc       240
     agagaaaaag gtgacctttg gtttatgtcg caccaaggac acaaaagaga agggatctgg       300
     atccccaagc tggaaccaga gcgaatagta tcgatcctag agtgggatcg atcaaaagag       360
     ccatgccacc gacttgaggc aatctgcgca gcaatgattg aatcgtgggg atacgacaag       420
     ttgacccatg aaatacgcaa gttttatgca tggatgatcg aacaggctcc atatagctct       480
     ctagcgcaag aaggaaaagc ttcttacata gcggaaacgg cactaaggaa actttacctt       540
     gacaaagaac cagctcaaga agatcttact caatacttac aagcaatctt cgaagattac       600
     gaagatggtg ctgaagtgtg tgtttatcac caggcaggtg agacgcttga tgccggtcta       660
     acagaagagc agaagcaggc tgaaaaggag agaaaagaga gagagagatc agagaaagag       720
     cgagaaaagc aaagacagct agcgcttaag aaaggcaaaa acgcagcaca agaagagggc       780
     gaacgtgaca atgaagtaaa cgccggaact tccggaactt ttagcgtgcc tagactcaaa       840
     agcctcacaa gtaaaatgcg ggtgccgaag tatgagaaaa gagttgctct caacctcgat       900
     catttgatct tatacacgcc ggagcagaca gatttatcca acacgcgttc aacgcggaag       960
     cagtttgaca cttggtttga aggtgtcatg gctgactatg agctaacgga ggataaaatg      1020
     caaataattc tcaatggttt aatggtctgg tgcattgaga atggaacctc cccgaacata      1080
     aacggaatgt gggtgatgat ggacggagat gatcaggtgg aattcccgat caagccgctc      1140
     attgaccacg ccaaacccac atttaggcaa ataatggccc atttcagtga cgtagctgaa      1200
     gcgtacattg aaaagcgtaa ccaggaccga ccatacatgc cacgatatgg tcttcagcgc      1260
     aatttaaccg acatgagctt agctcgttac gcgtttgatt tctacgaaat gacttctaga      1320
     actccaatac gtgcgagaga ggcacacatc cagatgaaag cagcagcact gcgtggcgca      1380
     aataataatt tgttcggctt ggatggtaac gtcggcacaa cggtagagaa cacggaaagg      1440
     catacgaccg aagacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga      1500
     agttgtatgc tagtagacta taagtagtta agtttactcg ttagtattct cgcttatggg      1560
     aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc atgtgtgttg ttgttacttt      1620
     ctatattttc gccgaacttt ttattggtgt tagcgcatgt ggtgagatac tatctcgatt      1680
     gccttaacat ttgataggaa gcaagggac                                        1709
//