ID   AJ307039; SV 1; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   AJ307039;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Turnip mosaic virus genomic RNA for partial viral polyprotein, isolate
DE   Xiaoshan R5
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (09-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Variation between Turnip mosaic virus isolates in Zhejiang province, China
RT   and evidence for recombination";
RL   J. Phytopathol. 150:142-145(2002).
XX
DR   MD5; de9f2df3229ffe479edc3aa2e9486bfb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /isolate="Xiaoshan R5"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1500
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q8QXK2"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXK2"
FT                   /protein_id="CAC85180.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLRKSGIPNELRDSLIRFFVNG
FT                   DDLLLGVHPKYEYVLDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGVWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPYSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTE
FT                   EQKQAEKERKERERSEKERERQRQLALKKGKNAAQEEGERDNEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..633
FT                   /product="NIb protein"
FT   mat_peptide     634..1497
FT                   /product="coat protein"
FT   3'UTR           1501..1709
XX
SQ   Sequence 1709 BP; 537 A; 335 C; 433 G; 404 T; 0 other;
     gggaacaata gtgggcaacc gtcaacagtc gtggacaaca cactcatggt catattagca        60
     gtcaactact cactcaggaa gagtggaatt ccaaatgaat tgcgtgatag ccttatcagg       120
     tttttcgtca atggagatga cttgctgcta ggcgtacatc caaagtacga gtatgtcctt       180
     gatactatgg cggataattt ccgtgaactg ggcttgaagt ataccttcga ttcaagaacc       240
     agagaaaaag gtgacctttg gtttatgtcg caccaaggac acaaaagaga aggggtctgg       300
     attcccaagc tggaaccaga gcgaatagta tcgatcctag agtgggatcg atcaaaagag       360
     ccatgccacc gacttgaggc aatctgcgca gcaatgattg aatcgtgggg atatgataaa       420
     ttgactcatg aaatacgcaa gttttatgca tggatgatcg aacaggctcc atatagctct       480
     ctagcacaag agggaaaagc tccttacata gcagaaacgg cactaaggaa actttacctt       540
     gacaaagaac cagctcaaga agatcttact cagtacttac aagcaatctt cgaagattac       600
     gaagatggtg ctgaagtgtg tgtgtatcac caggcaggtg agacgcttga tgccggttta       660
     acagaagagc agaagcaggc tgaaaaggag agaaaggaga gagagagatc agagaaagag       720
     cgagaaaggc aaagacagct agcacttaag aaaggcaaaa acgcagcaca agaagagggc       780
     gaacgtgaca atgaagtaaa cgccggaact tccggaactt ttagcgtgcc tagactcaaa       840
     agtcttacaa gcaagatgcg tgtgccgaag tatgagaaaa gagttgctct caacctcgat       900
     catttgatct tatacacgcc ggagcagaca gatttatcca acacgcgttc aacgcggaag       960
     cagtttgaca cttggtttga aggtgtcatg gctgactatg agctaacgga ggataaaatg      1020
     caaataattc tcaatggttt aatggtctgg tgcattgaga atggaacctc cccgaacata      1080
     aacggaatgt gggtgatgat ggacggcgat gatcaggtgg aattcccgat caaaccgctc      1140
     attgaccacg ccaaacccac atttaggcag ataatggccc atttcagtga cgtagctgaa      1200
     gcgtacattg aaaagcgtaa ccaagaccga ccatacatgc cacgatatgg tcttcagcgc      1260
     aacttaaccg acatgagctt agctcgatac gcgtttgatt tctatgaaat gacttctaga      1320
     actccaatac gtgcgagaga agcacacatc cagatgaaag cagcagcact gcgtggcgca      1380
     aataacaatt tgttcggctt ggatggaaac gttggtacaa cggtagagaa cacggagagg      1440
     catacgaccg aggacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga      1500
     agttgtatgc tggtagacta taagtattta agtttactcg ttagtattct cgcttatggg      1560
     aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc atgtgtgttg ttgttacttt      1620
     ctatattttc gccgagcatt ttattggtgt tagcgcatgt ggtgaggatc atcctcgatt      1680
     gccttaacat ttgataggat gcaagggac                                        1709
//