ID   AJ307038; SV 1; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   AJ307038;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   03-JUN-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Turnip mosaic virus genomic RNA for partial viral polyprotein, isolate
DE   Hangzhou C2
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (09-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Variation between Turnip mosaic virus isolates in Zhejiang province, China
RT   and evidence for recombination";
RL   J. Phytopathol. 150:142-145(2002).
XX
DR   MD5; 5fd48a245e9ee7fc488b92e42817979c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Turnip mosaic virus"
FT                   /host="chinese white cabbage"
FT                   /isolate="Hangzhou C2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /note="yellowing sample"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1500
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q8QXK3"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXK3"
FT                   /protein_id="CAC85179.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNG
FT                   DDLLLSVHPEYEYILDTMANNFRELGLKYTFDSRTKEKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEHGAEACVYHQAGETLDAGLTD
FT                   EQKQAEKEKKEREKAEKERERQKQLALKKGKNVAQEEGERDKEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..633
FT                   /product="NIb protein"
FT   mat_peptide     634..1497
FT                   /product="coat protein"
FT   3'UTR           1501..1709
XX
SQ   Sequence 1709 BP; 527 A; 348 C; 444 G; 390 T; 0 other;
     gggaacaata gtgggcagcc atcgactgtt gtagacaaca cgctcatggt catactggct        60
     gtcaactatt cactcaagaa aagtggaatt ccaagtgagc tgcgcgacag catcatcaga       120
     ttcttcgtca acggagacga tttactgcta agcgtacacc cagagtatga gtatatcctt       180
     gacactatgg caaacaactt tcgtgaactg ggtctaaagt acactttcga ctcaaggacc       240
     aaggaaaaag gagacctttg gtttatgtcg caccaagggc acaaaagaga gggaatctgg       300
     attcccaagc ttgagccaga gcgaatagta tcgatcctag aatgggatcg gtcgaaagag       360
     ccatgccatc gactagaggc aatctgcgca gcgatgattg agtcgtgggg atacgacaag       420
     ttgactcacg agatacgcaa gttttacgcg tggatgattg aacaagctcc atttagctcc       480
     ctagcacaag aagggaaagc tccttacata gcggaaacag cgctgaggaa gctttacctt       540
     gataaggaac cagctcaaga ggatctcacc cattatttgc aagcaatctt tgaagattat       600
     gaacatggtg ctgaggcttg tgtttatcac caggcaggtg aaacgcttga tgcaggtttg       660
     acagacgagc aaaagcaagc ggagaaggag aagaaggaga gagagaaggc agaaaaggaa       720
     cgagagaggc agaagcagtt ggcactcaag aaaggcaaga atgttgcaca agaagaggga       780
     gaacgcgaca aggaagtgaa cgctggaacc tctggaactt tcagtgtacc caggcttaag       840
     agtttgacaa gcaagatgcg cgtgccaaga tacgagcaaa gagtggctct aaacctcgat       900
     catctaatcc tatacacgcc ggagcagacg gatctgtcca acacacgttc aacgcgaaag       960
     cagtttgaca catggtttga aggtgtaatg gctgattacg aactgacgga ggacaaaatg      1020
     caaatcattc tcaatggttt aatggtctgg tgcattgaga acggaacctc cccgaacata      1080
     aacggaatgt gggtgatgat ggacggcgac gatcaggtgg aattcccgat caaaccgctc      1140
     attgaccacg ccaaacccac atttaggcag ataatggccc atttcagtga cgtagctgaa      1200
     gcgtacattg aaaagcgtaa ccaagaccga ccatacatgc cacgatatgg tcttcagcgc      1260
     aatttaaccg acatgagctt agctcgatac gcgtttgatt tctatgaaat gacttctaga      1320
     actccaatac gtgcgagaga agcacacatc cagatgaaag cagcagcact gcgtggcgca      1380
     aataacaatt tgttcggctt ggatggaaac gttggtacaa cggtagagaa cacggagagg      1440
     catacgaccg aggacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga      1500
     agttgtatgc tggtagacta taagtattta agtttactcg ttagtattct cgcttatggg      1560
     aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc atgtgtgttg ttgttacttt      1620
     ctatattttc gccgaacatt ttattggtgt tagcgcatgt ggtgaggatc gtcctcgatt      1680
     accttaacat ttgataggat gcaagggac                                        1709
//