ID   AJ307034; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   AJ307034;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus genomic RNA, isolate Xixia
XX
KW   coat protein; TGB2 protein; TGB3 protein; nucleic acid binding protein.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC   Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus;
OC   Shallot latent virus.
XX
RN   [1]
RP   1-1808
RA   Adams M.J.;
RT   ;
RL   Submitted (09-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; 7944f8028001825b4af2815b900b047e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="garlic"
FT                   /isolate="Xixia"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Henan"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:Q8UZB2"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZB2"
FT                   /protein_id="CAC85173.1"
FT                   /translation="MPLSPPPDHTKTFFAGAVGICIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCHQDGTKRIVYHSPARNFPSSNLLPNFSSPLCLLALIFGLICLSERIKSSSSTRIT
FT                   CSCNHS"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /db_xref="GOA:Q8UZB1"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZB1"
FT                   /protein_id="CAC85174.1"
FT                   /translation="MQLQPFIALITGLLATLLLCYSLESFKTETCTVVITGESVKIIGC
FT                   EFTKDFIDLAKQAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8UZB0"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZB0"
FT                   /protein_id="CAC85175.1"
FT                   /translation="MTNEEEELSNVQSLPTRDPGTIPERERNKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1419..1715
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:Q8UZA9"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZA9"
FT                   /protein_id="CAC85176.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTKDNCVDIINIIVSKIVCESAGASRY
FT                   ARARRAMSIGRCPRCFRCSPRFYFTKNCDTKTCSPGISYNAKVKDFIVDGVTM"
FT   3'UTR           1716..1808
XX
SQ   Sequence 1808 BP; 514 A; 396 C; 403 G; 495 T; 0 other;
     atgcctctaa gtcctccgcc tgaccacaca aagactttct tcgctggtgc ggtcggaatt        60
     tgcatagctc tctgcttgta caccttgact cgctcaacgt tgccacacgt cggggataac       120
     atacatagtt tgccacacgg tggttgccat caagacggta ccaaacgaat tgtctatcac       180
     agtccagcta ggaatttccc aagtagcaac ctgcttccaa acttttcctc cccactctgt       240
     ctgcttgcgc taatttttgg tttaatctgt ttgagtgaga ggataaaatc aagttctagt       300
     acgcgcatca catgcagttg caaccattca tagctctgat cactggtctc ttggcaactt       360
     tgcttctctg ttacagtctt gaaagtttca aaactgaaac gtgcactgta gtgattactg       420
     gcgaatcggt taagataatt ggttgtgagt ttacaaagga tttcatcgac ctcgccaagc       480
     aggcaaaacc ttttggttca ctttaggtac acagcgctct aaattgatat tatgactaac       540
     gaagaagaag aactcagtaa cgtgcagagt ttgccaactc gcgatccagg gactatcccc       600
     gagcgtgaac gaaacaaagc agtgaacgat gtaggcgtca tggaacggga aggctttgaa       660
     gctgtgcttc gaaggagcga aagtcgtttc aacaaactta aggagaagtg catgtctgaa       720
     ttatctagcg tgaatgtcac gaattgcggg tgggagtctg gaagacccaa agctcaactt       780
     gctgacagtc tcaaaggaga cgcttcaaat attttcacta ggccctccat ggatgccctc       840
     cttgttcgaa attacgcacc tgaaagcaac aatatggcga ctgccgagga attggcgaaa       900
     atttccgcca aggtgcaagc ccttggcgcc cccgaagaat gtctagccga agtcttctgg       960
     gatatatgta tgtactgcac cactgcagga agttctccaa atgttaatcc caaaggaact      1020
     atttctgtcg ggggtaaagt tgtaactagg gacatggtag tagccgtgat taaagaatac      1080
     tccacgttgc gacaagtctg ccgctgctac gcgcctgttg tctggaatta catgttgttg      1140
     aatgaacaac cacctgcaaa ttgggatgcg aagggtttca ccgagaacac caaatatgcg      1200
     gctttcgata ctttcgatgc agtaacaaat aaagctgcaa tccaaccact tgaggggttg      1260
     attcgggccc ccactgatgc tgaacggatc gcatttgcaa cacacaaaaa gttagccctg      1320
     gctaagaatg ctcaaaattc tcgttacgcc aatacttctg cagaagttac tggaggtttc      1380
     ttcggatgtt ttcctaaaaa caatttcaga gagaatcgat gttgatcaaa cagagaactt      1440
     accgtcgttt attgcgtgct atatttaaat tgcatactaa ggataattgt gtggatataa      1500
     taaatatcat tgtgagtaaa atagtgtgtg aaagtgcggg tgcttcacgt tatgctcgag      1560
     ctcgtagagc catgagcata ggtaggtgcc ctcgctgttt ccggtgctca cctcgttttt      1620
     atttcactaa aaactgtgac actaaaactt gttccccagg tattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactacaaac cttggctagt      1740
     tgcccataaa acctaaataa tgcataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//