ID   AJ307032; SV 1; linear; genomic RNA; STD; VRL; 2082 BP.
XX
AC   AJ307032;
XX
DT   05-FEB-2002 (Rel. 70, Created)
DT   05-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Leek yellow stripe potyvirus genomic RNA for partial viral polyprotein,
DE   isolate Xixia
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Leek yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-2082
RA   Adams M.J.;
RT   ;
RL   Submitted (09-MAY-2001) to the INSDC.
RL   Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted,
RL   Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s705-002-8330-y.
RX   PUBMED; 11890533.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Characterisation of some carla- and potyviruses from bulb crops in China.
RT   Brief report";
RL   Arch. Virol. 147(2):419-428(2002).
XX
DR   MD5; ec9964124dfb0bb723f168bc12002bac.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2082
FT                   /organism="Leek yellow stripe virus"
FT                   /host="garlic"
FT                   /isolate="Xixia"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Henan"
FT                   /db_xref="taxon:42004"
FT   CDS             <1..1488
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q8UZ38"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q8UZ38"
FT                   /protein_id="CAC85182.1"
FT                   /translation="GNNSGQPSTVVDNSLMVVFSMYYAMEMSNIEDIHSKCVFFVNGDD
FT                   LLIAVEPGSELFLDSLQNLFHQLGLNYNFDSRTRNKEELCFMSHMGVLQDGIYIPKLDK
FT                   ERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWVLEQAPYSELSAVG
FT                   KAPFISEMALRNLYTDYKATEVELARYLELYANDTTIEDIFEYQAGEELDAGTQASKSS
FT                   KSNTDKSIEQRNPAPTQTSTSGRKDDDNSDLSSSKDRDVNVGTTGTFSVPRIKQITQKG
FT                   LSIPMDGGKSVLNLDHLLQYRPSQLCISNTRATRAQFKTWRSKLQDEYGVSDSEMSVIL
FT                   NGLVVWCIENGTSPNVNGVWTMMDGEEQVEFPLLPVVEHAQPTLRQIMTHFSALAEAYI
FT                   EMRNSEQAYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRP
FT                   RLFGLDGNVTTMDEDTERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     <1..621
FT                   /product="NIb protein"
FT   mat_peptide     622..1485
FT                   /product="coat protein"
FT   3'UTR           1489..2082
XX
SQ   Sequence 2082 BP; 640 A; 409 C; 486 G; 547 T; 0 other;
     ggtaacaaca gtggacaacc atccacagtg gtagataatt ctcttatggt tgtattttct        60
     atgtactacg ccatggaaat gagcaatatt gaagacattc atagtaagtg cgttttcttt       120
     gtgaacggcg atgacttgct aattgcagtt gaaccaggct ctgaactctt ccttgatagt       180
     ttgcaaaact tatttcatca actcggttta aactataatt ttgatagtcg aacacgcaat       240
     aaagaggagt tgtgtttcat gtcgcatatg ggggttctac aagatggtat ttatatacca       300
     aagctagata aggagcggat agtgtcaata ctggaatggg atcgcgctca acaacctgag       360
     cataggttgg aagctatctg cgcagctatg attgaagcat ggggttaccc agatcttctc       420
     gaccgaattc gcaaattcta ttgttgggtc ctcgaacaag cgccgtatag cgagttgagt       480
     gccgttggaa aggcgccatt catctctgag atggccttgc gcaacttgta cactgactat       540
     aaagctacag aagttgagtt agcaaggtac cttgagctgt atgctaatga tacaaccata       600
     gaagatattt ttgagtacca agcaggtgaa gaactagatg caggcacaca agcgagcaag       660
     agctcaaaga gtaacacaga taaatctata gagcaacgaa atccagcacc aacgcaaact       720
     agtacaagtg gaaggaaaga tgatgacaac tcggacttaa gctcgagtaa agatagggat       780
     gtaaatgtag gcaccacagg gacgttcagt gtgccaagaa taaaacaaat cacacaaaaa       840
     ggcttatcaa ttccgatgga cggaggtaaa tcagtgctta atctggacca cctcctacaa       900
     tataggccta gtcaactatg tatatcaaat actagagcca ctagagcaca attcaaaact       960
     tggagatcta aactacagga tgaatatgga gtttcagata gtgagatgag cgtcattttg      1020
     aatggtttag tggtgtggtg tattgagaat ggcacatcac caaatgtaaa cggagtctgg      1080
     acgatgatgg acggtgaaga acaagttgaa tttcctttgc tgccagtcgt cgaacacgca      1140
     cagccaaccc tacgacaaat aatgacacac ttctcagcgc ttgcagaagc ctatattgag      1200
     atgagaaatt cggaacaagc gtacatgcct agatacggat tgcagcggaa tctcacagat      1260
     atgagtctcg cacggtatgc atttgacttt tatgaagtca cgtcaagaac accagttaga      1320
     gcgcgcgagg ctcacgcaca gatgaaagca gcagccttgc ggaattcaag gccaaggctg      1380
     tttggactag acggtaacgt cacaaccatg gatgaggaca cggagaggca cacagcacat      1440
     gacgtgaatg cacggatgca ccatctcgat ggtgcgcata tgcagtgatg tttcggttta      1500
     taaccggtta tggacttcca tctaaaaagt ctcgagcgcc aaacttgtat tttggctagt      1560
     ctagtgaaac tatgattcac tcgttcaagg cagtttctac tttaaggatg acttgagaat      1620
     tagtagctct caatgccggc cacaatggtg gttaccaaga tccaacactt ggtttgaagc      1680
     cgatcatctg aagatctatc ctgagtacgg ttaattaaag aaggtgaatt caattgttaa      1740
     gggtggtaag tctgaagcct ttatggtgta tacgcagcct gaattttgat accccatctt      1800
     taccctacaa cggagtgcta ctttaaagac tagctaggat tgagaccgaa ttctcacgtg      1860
     ctggcatggc cagcggctga tcacctaatg attagttgac tactttatag tcaaattgga      1920
     aacccgtagt atcctatcct tacctaatat cgtaagtttt atttactggt gtagtgtggt      1980
     acaaccacct tataaacact ttgaatatta ggatcgagct gttcatttga agacactaag      2040
     agtggttaac catgtgtgtg ttcttatgtt gcagtaagag ac                         2082
//