ID AJ306719; SV 1; linear; genomic RNA; STD; VRL; 2284 BP. XX AC AJ306719; XX DT 05-FEB-2002 (Rel. 70, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Oat mosaic virus genomic RNA for viral polyprotein, RNA2 XX KW P1 protein; P2 protein; polyprotein. XX OS Oat mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-2284 RA Adams M.J.; RT ; RL Submitted (17-APR-2001) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s007050200013. RX PUBMED; 11958462. RA Zheng T., Chen J., Chen J.P., Adams M.J.; RT "The complete sequence of Oat mosaic virus and evidence for deletion and RT duplication in RNA2"; RL Arch. Virol. 147(3):635-642(2002). XX DR MD5; 57711d0789e24cbb36d57a357a30eda7. XX CC related entry AJ306718 XX FH Key Location/Qualifiers FH FT source 1..2284 FT /organism="Oat mosaic virus" FT /host="oats" FT /isolate="Cranbrook:laboratory isolate" FT /mol_type="genomic RNA" FT /country="United Kingdom:Kent" FT /note="RNA2" FT /db_xref="taxon:157837" FT 5'UTR 1..77 FT CDS 78..1022 FT /product="polyprotein" FT /note="putative alternative start codon 24..26" FT /db_xref="GOA:Q8UZ26" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:Q8UZ26" FT /protein_id="CAC84676.1" FT /translation="MSSSRNLALLATMENQVPEWAQRIVRSSRNENQEMPRPISDTWKK FT IITANMLPPGNPTTTISDKDGSVVAHFGAYDSYLSTILQALGTPLQRLRMHTKPTPQEA FT ALFEDCSDKPWFFTKNDYHAWAFQYETVVQTFVTFTFRDGFCYLNLFTPMSFAVTIDHT FT ESFCRILEQIPEALGAFPTLGNILKVLIMLSHKFPEVVNAAHPTIAKHPGEPHLHVVDR FT RGVPPSWLLLCSSTIGNLITLLLNNIDNEALSFPTGNAPENYTNWSHEHDHWVTDRLIT FT RADFYSLFHPFTGTGHSLTATARPPRLRVRRVV" FT mat_peptide 78..851 FT /product="P1 protein" FT mat_peptide 852..1019 FT /product="P2 protein" FT misc_feature 938..939 FT /note="putative position of deletion of approx 1.7kb" FT 3'UTR 1025..2284 FT repeat_region 1114..1645 FT /rpt_type=DIRECT FT repeat_region 1639..2170 FT /rpt_type=DIRECT XX SQ Sequence 2284 BP; 610 A; 658 C; 441 G; 575 T; 0 other; aaaataaaac gacctgacaa catatgacac gaaacgactt ggaaatacac aactctgcgt 60 gcaaccttgc tctctccatg tcctcctccc gcaacttggc gctcctcgca acaatggaga 120 accaagtccc cgagtgggcg caacggatcg tccgtagctc tcgcaacgag aaccaggaaa 180 tgccacgccc gattagtgac acctggaaga aaatcattac tgctaatatg ttgccacctg 240 gtaacccaac tactacaata tctgataagg atggtagtgt tgtggcccac tttggtgcct 300 atgacagtta tcttagcacc atccttcagg cacttggcac gcccttacaa cgactgcgca 360 tgcacaccaa acccactccg caggaagctg cgctcttcga ggattgctct gataagcctt 420 ggttcttcac caaaaatgat taccacgctt gggccttcca atatgagact gttgtacaaa 480 ccttcgtaac tttcacattt cgcgatggtt tttgctacct gaacttattc acacctatga 540 gctttgctgt aactatcgat cacacggaat ccttttgccg catattagaa caaatacccg 600 aagcgttggg agcgtttccc actcttggca acattctaaa ggtcctaatt atgctcagcc 660 acaaatttcc tgaggttgtg aatgccgccc atcccaccat agcaaagcac ccaggggaac 720 cccacttaca tgtggttgac cgtagaggag ttcctccctc atggctgcta ctctgctcta 780 gcaccatcgg aaatcttata acgcttctcc tgaacaacat tgataatgaa gcattatcct 840 tcccaactgg gaacgctcct gagaattaca caaattggag tcatgagcat gaccactggg 900 tgaccgacag gctaatcacg cgtgcagact tctactccct tttccaccct ttcaccggca 960 ctggccattc actaacggcc accgctcgtc cccctcgctt gcgcgtgcgc agggtagtat 1020 aggttccttt ccttttcttt tcctttagct ttctcttggc ttctcaccct tgctatcacc 1080 acgctttaga tacccgcaca ccccaacccc acttagcatc ctgccgcctt cgcgcgcgca 1140 caactccaaa ccatagtctc agctgcgcta ttcaacgcca gctgtgcaaa aacacaaaac 1200 aaaccattct gtatccacag catatcatcc actgtattgc ataatcgtct ttactgttca 1260 agccattaat atggtccgta atcactaaaa cgcatttcag cttcagcctc atgagacgtg 1320 tcaagttcac gtagagcggg tctacggcgt agctaacccc tgcaccagcc tcccttacgt 1380 tgaaccgact cgcccctcag gtcatttaac tgtgttctaa gtgctcctaa ggactaatca 1440 cctttgcacg gcaaacacag ttgctggaat ggctcgagct tttagcgcga ttgcatcatc 1500 aacgccatga aagagagcga aacgttgtga aatggtgtaa aacccaatcg tccagaggcg 1560 gattgatctc caaatctggg aacggttggc aataaaccat ctagtaacca acgctcaaaa 1620 tttatggtgc cacgttcata gcatcctgcc gccttcgtgc gcgcacaact ccaaaccata 1680 gtctcagctg cgctattcaa cgccagctgt gcaaaaacac aaaacaaacc attctgtatc 1740 cacagcatat catccactgt attgcataat catctttact gttcaagcca ttaatatggt 1800 ccgtaatcac taaagcgcat ttcagcttca gcctcatgag acgtatcaag ttcacgtaga 1860 gcgggtctac ggcgtagcta acccctgcac cagcctccct tacgttgaac cgactcgccc 1920 ctcaggtcct ttaactgtgt tctaagtgct cctaaggact aatcaccttt gcacggcaaa 1980 cacagttgct ggaatggctc gagcttttag cgcgattgca tcatcaacgc catgaaagag 2040 agcgaaacgt tgtgaaatgg tgtaaaaccc aatcgtccag aggcggattg atctccaaat 2100 ctgggaacgg ttggcaataa accatctagt aaccaacgct caaaatttat ggtgccacgt 2160 tcatagcatc atgtttaatt ttctgcactg catagaaaag ttacaaaaac ctgctacaat 2220 catttgtcat taaatgatgg ttgccgcccg acgcccgaca atttttgtac acaggaaatg 2280 tgac 2284 //