ID AJ304404; SV 1; linear; genomic RNA; STD; VRL; 3391 BP. XX AC AJ304404; XX DT 06-JAN-2003 (Rel. 74, Created) DT 06-JAN-2003 (Rel. 74, Last updated, Version 1) XX DE Cucumber mosaic virus 1a gene for replicase, isolate NAK, genomic RNA 1 XX KW 1A gene; replicase. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3391 RA Chen Y.K.; RT ; RL Submitted (21-NOV-2000) to the INSDC. RL Chen Y.K., Lab. of Virology, Dept. of Plant Sciences, Wageningen RL University, Binnenhaven 11, Wageningen, 6709 PD, NETHERLANDS. XX RN [2] RX DOI; 10.1128/JVI.76.8.4119-4124.2002. RX PUBMED; 11907253. RA Chen Y.K., Goldbach R., Prins M.; RT "Inter- and intramolecular recombinations in the cucumber mosaic virus RT genome related to adaptation to alstroemeria"; RL J. Virol. 76(8):4119-4124(2002). XX DR MD5; 4492fc7e39afe230aa70c3ace8af01ac. DR EuropePMC; PMC136112; 11907253. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3391 FT /organism="Cucumber mosaic virus" FT /host="Alstroemeria" FT /lab_host="Nicotiana benthamiana" FT /strain="ALS" FT /isolate="NAK" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 96..3074 FT /gene="1a" FT /product="replicase" FT /db_xref="GOA:Q8AZL1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8AZL1" FT /protein_id="CAC80015.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEERLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALLLCETLDCLDFFPRSGL FT RQDLVLNFGGSWVTHYLRGHNVHWWSPCLGIRDKMRHTERLMSMRKVILNDPQQFDGRQ FT PDFCTESAAECKVQAHFAISIHGEYDMAFRGLCEPMNAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSSVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSMK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKVILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRTREEREFLVKLSTSVTFNEECSFDGGKEWDVISSAAFVTAQ FT AVADGTILAEEKAKKLADRLAVPVEEVSAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNKRNSLESNLKFVFDT FT YFSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTRTKYSRWV FT SQSKVRNSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIKT FT VHEFQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIATCI FT PLV" XX SQ Sequence 3391 BP; 859 A; 743 C; 782 G; 1007 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctccc ctgtaaaact accctttgaa 60 ttcttcttct cgacttttct tagtttaaaa ttcctatggc aacgtcctca ttcaacatca 120 atgaactggt agcctcccac ggcgataaag gactacttgc gacagccctc gttgataaga 180 cagctcatga acagctggag gagcgacttc aacatcaacg tagaggcctt aaggtctaca 240 tccgtaatgt tttggatgta aaggactccg aagtcattcg gactcggtat ggtggtaagt 300 acgacctcca tctcacccag caggaattag ctccccatgg cctcgctggt gccctcctct 360 tgtgtgaaac tctcgattgt ctagactttt tccctcgttc aggtctgcgg caggacctcg 420 tcttaaactt cggaggaagt tgggtcacac actatcttcg cggacacaac gtacattggt 480 ggtccccatg tttgggtatt cgtgacaaga tgcgtcacac tgaaagattg atgagcatgc 540 gcaaggtcat tttaaacgat ccacaacagt ttgatggccg ccagccggac ttttgcactg 600 agtctgcagc tgaatgcaaa gttcaagccc actttgctat ttctatacac ggagaatatg 660 atatggcctt tagaggttta tgtgagccaa tgaacgctca cggaactacg attttgaaag 720 ggacgatgat gttcgacggt gctatgatgt ttgacgacca aggctttatt cctgaactta 780 aatgtcagtg gcgaaaaatt aaatccgcct tttctgagga ggaggatgcc acttgtttag 840 cagctaaact caattctagt gttttttcac gcgtgcgaaa tgggaaaacc ttaatcgcat 900 ttgacttcgt tgaggaatcc acgatgtctt atgttcacga ttgggataat ataaaatcgt 960 ttatgacaga tcaaacgtac tctttcaatg gtatgaccta tggaattgag cgttgtgtta 1020 tttacgctgg cgtgatgact tacaagattg ttggcgtgcc tggtatgtgc ccacccgaac 1080 tcattcgaca ttgtatctgg ttcccctcta tgaaggacta tgttggtctt aagattcccg 1140 cgtctgatga cttggttaaa tggaaaacag tccgtatttt actgtcaaca ttacgtgaga 1200 ctgaagaaat agctatgcgt tgttataacg acaagaagaa ttggatggat caattcaagg 1260 ttattctcgg tgttttatca tcgaagtcct ccacgatcgt tatcaatggt atgtctatgc 1320 aatccggtga acgtattgat ctcaatgatt atcattacat cggttttgct atccttctcc 1380 acacgaaatt aaaatacgaa caacttggga aaatgtacga tatgtggaat gcttccttca 1440 tttggaagtg gtttgcgtct atgtctagac cattccgtgt tttcttttcc actgttgtta 1500 agactttgtt tccgactctg agaacgcgcg aggaaaggga gtttttggtc aaactttcca 1560 cttccgtcac ctttaacgag gagtgctctt ttgacggagg gaaagaatgg gacgtgatat 1620 catcagcggc tttcgtaacc gctcaggctg ttgcagatgg tactattctg gccgaggaga 1680 aagctaaaaa attagctgat cgtctggccg tgcctgttga agaagtatct gctattcctg 1740 aggtgtctcc tacacctgtt gatcagggca ctgcttgtgg actggaaaca gaaacatcgg 1800 aactggattc tctgtctgcc caaacacgtt cccccatcac acggatcgct gaaagagcga 1860 ccgctatgct tgaatattca gcttatgaga aacaattgca cgataccacc gtttcaaatc 1920 ttcaacgaat ttggtgcatg gcaggtggcg acaacaagag aaactcttta gagagtaatt 1980 tgaaatttgt gtttgacact tatttttctg ttgacgccct ggtaaatgtt cactttccta 2040 ctgggaggtg gatgcaccct gtgcctgagg gcgtggtata ctctgttggt tataatgaga 2100 agggtcttgg tcctaaactt gatagtgagt tgtacatagt taatggtgat tgtgtgattt 2160 cgaacagtca tgatttgttt tcaatcacca aatctttgtt agctcccacc ggaaccatca 2220 gccaagtcga tggtgtggct gggtgcggaa aaaccactgc tataaaatcc atgtttaatc 2280 cttccacaga tataattgtc acagccaaca agaaatccgc tcaagatgtg cgttatgcgc 2340 tgtttaaatc tactgactcc aaagaagctt gtgcttttgt taggaccgct gattccatat 2400 tactcaatga ttgccctacg gtgtctcgag tgcttgtgga tgaagttgtt ttgttgcact 2460 ttggtcagtt gtgcgctgtc atgtcgaaac ttcatgctgt cagagctttg tgtttcggag 2520 attccgaaca gatagccttc tcctctcgtg acgcttcgtt cgacatgcgt ttctctaagc 2580 ttattccgga tgagaccagt gatgcggaca caactttccg tagtccacaa gatgtggtac 2640 cacttgtgcg tttgatggct acgaaggctc taccgagagg gacccgtacg aaatactcaa 2700 gatgggtgtc ccaatctaaa gtgaggaatt ctgttacctc gcgtgctgtt gctagtgtat 2760 ctctagttga actggacccc accagattct atattacgat gacgcaagct gataaagcct 2820 cactaattac tagagctaag gaactgaacc tacccaaggc attctacact gataggataa 2880 agactgtcca tgaatttcaa ggtatttcag aagatcatgt gaccctggtt aggttgaaga 2940 gtactaaatg tgacctgttc aagaaatttt cctactgctt agttgcagtt actcgacaca 3000 aggtcacctt ccgctatgag tactgtggtg tgttaggtgg ggacctaatc gctacttgta 3060 ttccgttagt ctgaacgcgg aatgtccgaa gacgttaaac tacactctct ttattgcgag 3120 tgctgagttg gtagttttgc tctaaactat ctgaagtcgc taaacccatt actggttgcg 3180 aacgggttgt ccatccagct tacggctaaa atggtcagtc atgccccaaa ggcatgccga 3240 caccctacag ggttgtcgag gtacccttga aatcatctcc tagatttctt cggaagggct 3300 tcgtgagaag ctcgtgcacg gtaatacact gatattacca agagtgcggg tatcgcctgt 3360 ggttttccac aggttctcca taaggagacc a 3391 //