ID AJ304395; SV 1; linear; genomic RNA; STD; VRL; 3289 BP. XX AC AJ304395; XX DT 26-MAR-2002 (Rel. 71, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Cucumber mosaic virus 2a gene for replicase and 2b gene for 2b protein, DE isolate NAK, genomic RNA 2 XX KW 2A gene; 2B gene; 2b protein; replicase. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3289 RA Chen Y.K.; RT ; RL Submitted (21-NOV-2000) to the INSDC. RL Chen Y.K., Lab. of Virology, Dept. of Plant Sciences, Wageningen RL University, Binnenhaven 11, Wageningen, 6709 PD, NETHERLANDS. XX RN [2] RX DOI; 10.1128/JVI.76.8.4119-4124.2002. RX PUBMED; 11907253. RA Chen Y.K., Goldbach R., Prins M.; RT "Inter- and intramolecular recombinations in the cucumber mosaic virus RT genome related to adaptation to alstroemeria"; RL J. Virol. 76(8):4119-4124(2002). XX DR MD5; 89486abc837eb76e5678ad2756f951f0. DR EuropePMC; PMC136112; 11907253. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3289 FT /organism="Cucumber mosaic virus" FT /host="Alstroemeria" FT /lab_host="Nicotiana benthamiana" FT /strain="ALS" FT /isolate="NAK" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 93..2615 FT /gene="2a" FT /product="replicase" FT /db_xref="GOA:Q8QME0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8QME0" FT /protein_id="CAC80003.1" FT /translation="MTSPPPTFSFANLLNGSYGVDTPEEVERVRREQREDAEAALRNYK FT PLPTVDVSESVPRDEPIVSRTVTTAPVTSVVDAFVSFGAEDYLEMSPSELLSAFELMVK FT PLRIGEVLCPNFDRSLFISSVAMARTLLLAPLTSTRTLKRFEDLVAGIYLKTDFFLEDD FT GPKTDVSQSDVPGYTFEPGQYSSVFEPPPICAKCDLILYQCPCFDFNALRESCAEKTFS FT HDYVIEGLDGVIDNATLLSNLGPFLLPVHCSYSKTEDPDFVVDPSLARPTDRVDAHVVQ FT AVCDTTLPTHVNYDDSFHQVFVDSADYSIDMDHVRLRQSDLVAKIPDGGHMLPVLNTGS FT GHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFRLSYMNVDALAKSNFVN FT VVGNFHAYMQKWQSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVTDTLNVDRPVPATI FT TFHKKTITSQFSPLFVSLFERFQRCLRERIVLPVGKISSLEMTSFSVLNKHCLEIDLSK FT FDKSQGEFHLMIQEHILNDLGCPAPVTKWWCDFHRFSYIKDKRAGVGMPISFQRRTGDA FT FTYFGNTIVTMAEFAWCYDTDQFDRLLFSGDDSLAFSKLPPVGDPSKFTTLFNMEAKVM FT EPAVPYICSKFLLSDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDFLFAHFMSFVDRLK FT FMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYKELYYSDRQQCDLV FT NTFCISEFQVIRRTTVKKKKNGCVDSSGVDRRPPPSPFAGGETSKTKVSRQKPASEGLQ FT KSQRESAIYSEIFPDVTIPRSRSRGLVS" FT mRNA 2413..2715 FT /gene="2b" FT CDS 2413..2715 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q8QMD9" FT /protein_id="CAC80004.1" FT /translation="MDVLTVVVSTADLHLAHLQEVKRRRQRSHVRNRRARGYKSPSERA FT RSIARFFQMLPFHGVDPVDWFPDVVRSPSVTSLVSYESFDDTDWFAGNEWAEGSF" FT exon 2413..2715 FT /gene="2b" FT /number=1 XX SQ Sequence 3289 BP; 784 A; 751 C; 740 G; 1014 T; 0 other; gtttattctc aagagcgtat ggttcaaccc ctgcctcctc tgtgaaatta ccctagtttt 60 attgatctac ttctagtctc ttttctgtta ctatgacaag tcctccaccc actttctcat 120 tcgccaatct gttgaatggc tcctatggtg ttgacactcc cgaggaagtg gaacgcgtta 180 gacgtgaaca acgcgaagat gctgaggcgg ctttacgtaa ttataagcct ttacccactg 240 tggatgtcag tgagagtgtc cctagagacg aacctattgt ctcgcgaacc gtcactacag 300 ctcctgttac atcagtcgtt gacgcgtttg tttcttttgg tgctgaggac taccttgaaa 360 tgtccccatc tgagctgctt tccgcttttg agttgatggt caaacccttg cgtatcggtg 420 aagtgttgtg cccgaatttt gatcgttcgc tattcatttc cagcgtcgct atggctagga 480 cgttgttgtt ggcaccactc acatccaccc gaacgttgaa gcgttttgaa gaccttgtgg 540 ctgggatcta tctaaaaact gatttctttt tagaagacga tgggcccaaa actgatgtct 600 cccaaagcga tgtgcccggt tataccttcg aaccagggca atactcatcc gtttttgaac 660 ccccccctat ttgtgctaaa tgtgacttga ttttgtatca atgtccgtgt ttcgatttta 720 acgcacttcg tgagtcttgc gcagagaaaa cattctctca cgactatgtt atcgagggtc 780 tcgatggtgt cattgataac gctacgctgt tatcaaattt gggaccattt ttgttacctg 840 tccactgttc ttattcaaag accgaggacc ccgatttcgt cgttgatcct agtcttgcgc 900 gacctactga tagggttgat gcacatgtag ttcaagccgt ttgcgatacc actctgccca 960 cccatgttaa ctacgatgat tcctttcatc aagtctttgt ggactctgct gattattcca 1020 ttgacatgga tcacgttcgg ttacgtcaat ccgatttagt agcaaaaatt ccggatggtg 1080 ggcatatgtt accggtgtta aataccggga gtggtcacaa gagagtaggt actacgaagg 1140 aggtcttaac agcaataaag aaaagaaatg ctgatgtccc tgagcttggt gactctgtta 1200 atctgtcacg cctgagcaaa gcagtagccg aacggtttcg tctctcgtat atgaatgttg 1260 acgctttggc taaaagtaac tttgttaatg ttgtcggtaa ttttcacgct tacatgcaaa 1320 aatggcaatc ttctggactt tcttatgatg atcttcctga tcttcacgcg gagaatttac 1380 agttttatga tcacatgatt aagtctgatg ttaagccagt tgtcaccgac acgttgaacg 1440 tcgacagacc tgtcccagct actattacat ttcacaaaaa gaccataaca tcccagttct 1500 caccgttgtt tgtatctctg tttgagagat tccagagatg ccttcgggaa cgtattgttc 1560 tgcccgttgg taagatttcc tcccttgaga tgactagttt ttcagtcttg aataaacatt 1620 gtcttgaaat tgatttatct aaattcgaca aatctcaagg tgagttccac ctcatgattc 1680 aagagcacat tctcaacgat cttggttgcc cagcacccgt caccaaatgg tggtgtgact 1740 ttcataggtt ttcctatatt aaagacaaac gtgctggggt tggaatgccc atcagctttc 1800 aacgccgtac tggtgacgct ttcacctatt ttggcaatac tattgtcacg atggctgagt 1860 ttgcttggtg ttatgacact gatcaatttg accgattgct cttttctggt gatgattctc 1920 tggctttttc taagctccca cctgttggag atcccagtaa gtttacaact ttattcaaca 1980 tggaagctaa ggtgatggaa cctgcagtac cttacatttg ttcgaagttt ctactctctg 2040 atgagtttgg taatacgttt tcagtccccg acccactacg tgaaatccag cggttaggta 2100 ccaagaagat accgtattcg gacaacaacg atttcttgtt cgctcatttt atgagttttg 2160 ttgacaggct gaagtttatg gacaggatgt cgcagtcctg tattgatcaa ttgtccattt 2220 tcttcgagtt gaaatacaag aagtccggga acgaagccgc ccaagttttg ggcgcgttta 2280 agaagtacac cgccaatttt aacgcctata aggagcttta ctactctgac cgtcaacaat 2340 gtgacttggt caatacgttt tgtatatctg agttccaggt gattcgtcgc actaccgtta 2400 agaagaagaa gaatggatgt gttgacagta gtggtgtcga ccgccgacct ccacctagcc 2460 catttgcagg aggtgaaacg tcgaagacaa aggtctcacg tcagaaaccg gcgagcgagg 2520 ggttacaaaa gtcccagcga gagagcgcga tctatagcga gatttttcca gatgttacca 2580 ttccacggag tagatcccgt ggattggttt cctgatgtcg ttcgctctcc gtccgttacc 2640 agccttgttt cttatgaatc ttttgatgat actgattggt ttgctggtaa cgaatgggcc 2700 gaagggtcgt tttgatttcc gacccttcgt cgtccgaaga cgttaaacta cactctcttt 2760 attgcgagtg ctgagttggt agttttgctt taaactatct gaagtcgcta aatccattac 2820 tggttgcgaa cgggttgtcc atccagctta cggctaaaat ggtcagtcat gccccaaagg 2880 catgccgaca ccctacaggg ttgtcgaggt acccttgtgc acggtaatac actgatatta 2940 ccaagagtgc gggtatcgcc tgtggttttc cacaggttct cgtccgaaga cgttaaacta 3000 cactctcttt attgcgagtg ctgagttggt agttttgctt taaactatct gaagtcgcta 3060 aatccattac tggttgcgaa cgggttgtcc atccagctta cggctaaaat ggtcagtcat 3120 gccccaaagg catgccgaca ccctacaggg ttgtcgaggt acccttgaaa tcatctccta 3180 gatttcttcg gaagggcttc gtgagaagct cgtgcacggt aatacactga tattaccaag 3240 agtgcgggta tcgcctgtgg ttttccacag gttctccata aggagacca 3289 //