ID   AJ301633; SV 2; circular; genomic DNA; STD; VRL; 1952 BP.
XX
AC   AJ301633; AF346618;
XX
DT   26-JUL-2001 (Rel. 68, Created)
DT   21-MAY-2003 (Rel. 75, Last updated, Version 5)
XX
DE   Canary circovirus, complete genome
XX
KW   cap gene; capsid protein; rep gene; replicase.
XX
OS   Canary circovirus
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RC   revised by [4]
RA   Weston J.H.;
RT   ;
RL   Submitted (14-NOV-2000) to the INSDC.
RL   Weston J.H., Veterinary Sciences Division, The Queen's University of
RL   Belfast, Stoney Road, Belfast, BT4 3SD, UNITED KINGDOM.
XX
RN   [2]
RX   PUBMED; 19184917.
RA   Todd D., Weston J., Ball N.W., Borghmans B.J., Smyth J.A., Gelmini L.,
RA   Lavazza A.;
RT   "Nucleotide sequence-based identification of a novel circovirus of
RT   canaries";
RL   Avian Pathol. 30(4):321-325(2001).
XX
RN   [3]
RP   1-1952
RA   Phenix K.V., Weston J.H., Ypelaar I.B., Raidal S.R., Lavazza A., Todd D.;
RT   ;
RL   Unpublished.
XX
RN   [4]
RP   1-1952
RA   Phenix K.V.;
RT   ;
RL   Submitted (06-FEB-2001) to the INSDC.
RL   Veterinary and Biomedical Sciences, Murdoch University, South Street,
RL   Perth, WA 6150, AUSTRALIA.
XX
DR   MD5; 654550e332939d9d31445de4c19f40ed.
DR   EuropePMC; PMC2812408; 20007276.
DR   EuropePMC; PMC303417; 14671117.
DR   EuropePMC; PMC3133700; 21177928.
DR   EuropePMC; PMC3647419; 23628223.
DR   EuropePMC; PMC4447918; 26021933.
DR   EuropePMC; PMC506959; 15308722.
DR   EuropePMC; PMC5165205; 27795441.
DR   EuropePMC; PMC6160883; 30078831.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1952
FT                   /organism="Canary circovirus"
FT                   /host="serinus canaria"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:142661"
FT   stem_loop       join(1935..1952,1..10)
FT                   /note="putative"
FT   rep_origin      join(1946..1952,1..2)
FT                   /note="nonanucleotide motif,CAGTATTAC"
FT   CDS             32..904
FT                   /gene="rep"
FT                   /product="replicase"
FT                   /note="ORFC1"
FT                   /db_xref="GOA:Q912W1"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q912W1"
FT                   /protein_id="CAC44748.2"
FT                   /translation="MAPVRAAAAKRWCFTLNNYTAEEEAKVRALLPGEFHFAICGKERG
FT                   EQGTPHLQGFLHFKKKQRLSALKKLLARAHWEKARGSDHDNEEYCSKENDVILTIGEPV
FT                   QGNRSDLAGAVAAVKAGRRMVDIAREFSEIYVKYGRGLRDLALMIGQKPRDFKTEVVVI
FT                   TGPSGVGKSRLASEMEGSKFYKMKGDWWDGYSNEDIVIMDDFYGWLPFCEMLRLMDRYP
FT                   HKVPVKGSYVEFTSKKIVITSNTHPESWYCPDKCYLPALFRRINKWMYWDGLRFEDVPD
FT                   AMKKHPINY"
FT   mRNA            complement(275..679)
FT                   /gene="rep"
FT                   /product="hyopothetical protein"
FT                   /note="ORF C2"
FT   regulatory      943..948
FT                   /gene="rep"
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   regulatory      complement(1153..1158)
FT                   /gene="rep"
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   CDS             complement(1154..1906)
FT                   /gene="cap"
FT                   /product="capsid"
FT                   /db_xref="GOA:Q8QME6"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8QME6"
FT                   /protein_id="CAD23544.1"
FT                   /translation="MWLTFNQVARRRRPLAPRRRRWRRRYWXRRRRIPANRRGHRTNRV
FT                   YRFRFVREFGQVLQKGTGGSQLSFGTDGINIILDDFLDWGTINWRLPFEDYRIRLAKVE
FT                   MRPLNESWEEWKGFGHNVPIQDNHLEDFFKKTRLDADPLANWDGARKWDLRKGFKRLFK
FT                   PRPQLSVTDTDAANVTAALWLNNPKSLWIPIMKKSDQNLPSSGTRVKHYGLAFSWPEPT
FT                   PNQMDYQVKVTIYCEFRQMNLTHLATPK"
XX
SQ   Sequence 1952 BP; 473 A; 464 C; 537 G; 475 T; 3 other;
     accggccact tggagccacg gagccaccac aatggcacct gttagagctg ctgctgcaaa        60
     gagatggtgc tttacgttga ataactatac ggcagaagaa gaagctaaag tgagggccct       120
     gctccctggt gagttccact ttgcaatatg tgggaaggaa cggggggagc agggaactcc       180
     tcatttgcag ggctttctac attttaaaaa gaagcagcga cttagtgccc tgaagaaact       240
     acttgcccga gctcactggg aaaaggcccg tggctcagat catgataacg aggagtattg       300
     tagtaaggaa aacgacgtga tactcaccat tggggagcca gttcaaggca accggagtga       360
     ccttgccgga gctgttgccg ccgtgaaggc cggaaggaga atggtggata tcgcgcgaga       420
     gttcagcgag atctacgtca agtatgggcg tggtctgagg gatttggccc tgatgattgg       480
     acagaaaccc cgtgacttca agacggaagt cgtcgttatc acggggcctt ccggggtggg       540
     caagtcgaga cttgcctctg aaatggaagg atcgaagttc tacaagatga aaggtgactg       600
     gtgggatggg tattccaatg aggatatagt catcatggat gacttctatg ggtggctgcc       660
     cttctgtgaa atgttgagat taatggacag gtatccacat aaagttcccg tgaaggggtc       720
     ttatgtggag ttcacgtcta agaagattgt cataacgagc aacacgcacc cggaaagttg       780
     gtactgtccc gataagtgct atctgcctgc tttgttcagg agaatcaata agtggatgta       840
     ctgggatgga ctgagatttg aggatgtgcc ggatgcaatg aagaagcacc cgatcaacta       900
     ttaacactca gccccgagga aaagagcgtc tcggaggtga ttaataaaaa atgcgcgcgc       960
     agcgcgcggc gaaggccgaa ggccgaagcc gcctgagacc gcgcgaagcg cggccaggcg      1020
     cgagcgacag cgagcgggca gaccccgggt ccccccgggg tcgcccccgt cgaggggccg      1080
     aaggccccga agaaagctat tttgtacccc ccatcaaata aaaagacttc agacaaataa      1140
     atgtttggtg tctttatttt ggagttgcca agtgagttaa gttcatttgc cggaattcac      1200
     agtagatggt gaccttgacc tggtagtcca tctggttggg ggtgggttct ggccaactga      1260
     aggctaaccc gtagtgtttg accctggttc cggagctggg aaggttctgg tcacttttct      1320
     tcatgatcgg tatccagagg gatttgggat tgttgagcca cagggccgcc gtgacgttag      1380
     cagcatcagt gtcggtcacg cttagttgtg gtcttggttt aaatagcctt ttgaagcctt      1440
     ttctgagatc ccatttacgg gccccgtccc agttcgctag ggggtcagca tcaagtcttg      1500
     tctttttgaa gaagtcctct aggtgattgt cttggatagg tacattgtgc ccgaaccctt      1560
     tccactcctc ccagctttca ttgaggggtc tcatttccac ttttgctaac ctgattctat      1620
     aatcttcaaa aggtaacctc caattgatag taccccaatc cagaaagtca tccagtataa      1680
     tgttgattcc atcagttcca aatgacagct gagacccccc tgtccctttt tgtagtacct      1740
     gaccgaactc cctaacaaat ctgaatctat agaccctgtt ggttctgtgg cccctcctgt      1800
     tggcagggat ccttctcctc ctccyccagt aacgacgcct ccatctcctc ctcctgggag      1860
     ccaaaggtcg tcgtctccta gcaacctggt taaaggttaa ccacatccgg gttaataatt      1920
     aaccagtggc yccaagtggc cgtgrcagta tt                                    1952
//