ID AJ298070; SV 1; linear; genomic RNA; STD; VRL; 2237 BP. XX AC AJ298070; XX DT 06-JUN-2001 (Rel. 68, Created) DT 27-JUN-2005 (Rel. 84, Last updated, Version 3) XX DE Soil-borne wheat mosaic virus ORF1 and partial ORF1 readthrough sequence, DE genomic segment RNA2, (Kent, UK) XX KW coat protein; ORF1; ORF1 readthroughsequence. XX OS Soil-borne wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-2237 RA Clover G.R.; RT ; RL Submitted (04-DEC-2000) to the INSDC. RL Clover G.R., Plant Health, Central Science Laboratory, Sand Hutton. York, RL N. Yorkshire, YO41 1LZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1016/j.jviromet.2004.08.013. RX PUBMED; 15488626. RA Ratti R., Budge G., Ward L., Clover G., Rubies-Autonell C., Henry C.; RT "Detection and relative quantitation of Soil-borne cereal mosaic virus RT (SBCMV) and Polymyxa graminis in winter wheat using real-time PCR RT (TaqMan)"; RL J. Virol. Methods 122(1):95-103(2004). XX DR MD5; 00755d6c3bd7f7eea6de16d130395f5a. XX FH Key Location/Qualifiers FH FT source 1..2237 FT /organism="Soil-borne wheat mosaic virus" FT /mol_type="genomic RNA" FT /country="United Kingdom:Kent" FT /note="RNA2" FT /db_xref="taxon:28375" FT CDS 193..>2237 FT /transl_except=(pos:841..843,aa:OTHER) FT /function="virion assembly and fungus transmission" FT /note="ORF1 readthroughsequence" FT /note="putative translation initiation site at position FT 313" FT /db_xref="GOA:Q91DM8" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q91DM8" FT /protein_id="CAC40962.1" FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAKRGTTPTTNQV FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWKGSSXRDGVS FT GKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEIIYAELEDKLLSFESSVYHP FT KAVTMETEVSVLPKLQTDLETDNAEEDIETTVVTEVLIDEESSYFWLYFVFLLLSILIS FT CFIALSRWFICFLGNRGGRGGPFFRRIATALWSARLWLLSKAARRYGNLGIVRKRYTRA FT GVRRYLRDYNFQFDEWESVVDCAPSEALIVADQRMFVRAVNKIVDLKGDFDAIEIVKKT FT FLNYGVRNYKVERWLNRHTIRSALGVLSDVTRREVLTLTDGMLSLENATLDEVLGCDVE FT SQRNSMYFKDIVALQFAFRLIGGPEFSDFVMAYKGTLYRCYVEATKRHTSMLEQFHVNE FT DQKRRNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWIKSRMLLRALQMLPSVGGGG FT NEGGGRFSEEALNRFAASQTFEERIEALHTDFDTAADDMESFSPED" FT CDS 193..843 FT /product="coat protein" FT /note="ORF1" FT /note="putative translation initiation site at position FT 313" FT /db_xref="GOA:Q91DM7" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q91DM7" FT /protein_id="CAC40963.1" FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAKRGTTPTTNQV FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWKGSS" XX SQ Sequence 2237 BP; 614 A; 386 C; 597 G; 640 T; 0 other; ttacgttgag tgttaactct tcttgtgata ttacctttct taccaggata agaaataaaa 60 tattttctgg gttatcacta tctcgaaact tagcagagac taacatctcg ctgctctagg 120 cctgcaatgc aataaatcct aggtagtcag ctgttagcgt gtgacgttga agggtagtgt 180 tatttcggtt cgctggataa gcttacgaga cttaaaggtg aggtcgacag gtctttacaa 240 aaggctgcgg ataaggtcac tgctgaaagt actgaatcgt tacaatcgaa agtggttgtg 300 cagttacctc aaatggctgt caagaacggt tatacgggtt acaacaagga attgaatttg 360 atggcatcta ttcatccttt cattaggctg ggtactttga taagtcagat tgagggatgg 420 caagcaacac gagctagcat acttacccat ttaggtgtaa tgctcaacgg tgttagtaag 480 ttaggtgagc gaaatttctt ctctagacag aaaagatttg ggacacacac tcaggacggt 540 gacgagatat tttgtgatct tggaggtgag gcagttatgc aaatcatcac cagactcaca 600 gtatcactac aatccgcgaa gggtgagggt tcccaaacca gaaatgctaa gagagggacg 660 acgccgacta ccaaccaagt tgagggtgag gaacaaggtc aaactgatca gacgttagcc 720 atttcgaatg cgctggctga atttatgact ttcatccaca ctaaagattt cacgacgaat 780 gagtgttaca cgcaagactc ttttgaagcc aaatttaatt tgaagtggaa aggttcgagt 840 tgacgggacg gcgtctcggg aaagttgagg gcacgcattg tcgaagattt ccagaatagg 900 ctggttttgg ccgacgattt gggtgttttt ccgagacgca atcttagcgg tgaggtgata 960 agggacgagc ctgaaataat atatgcagaa ctagaggaca agctcttgag ctttgagagt 1020 tctgtgtatc atcctaaagc tgtgactatg gagacagaag tgtctgtatt gccgaaattg 1080 caaacggatc ttgaaacaga taacgctgaa gaagacattg agacaactgt ggttactgag 1140 gtgctcatcg atgaggagag cagttacttc tggttatact tcgtatttct cttattgtct 1200 atccttatat cgtgtttcat tgcgctgtcg cgatggttta tatgttttct cggtaataga 1260 ggagggcgcg gtggcccttt ctttcggaga atagccactg cattgtggag cgcgcgactg 1320 tggctgttaa gtaaggcggc cagacgttac ggcaatcttg gaatcgtacg aaagagatat 1380 acacgtgctg gcgtgcgcag gtacttgcgt gattataatt tccaatttga tgaatgggaa 1440 agcgtggttg actgtgctcc gagtgaagct ctaatcgtcg cagatcagag aatgtttgtg 1500 agggctgtga acaagattgt agatttaaag ggtgattttg atgctattga aattgtcaag 1560 aagactttcc taaattacgg agtccgcaat tacaaagtgg aaagatggtt gaacaggcat 1620 acaatacgct cggcacttgg tgtactgagt gatgttacga ggagagaagt acttacatta 1680 actgatggta tgctatcatt ggagaacgct acgcttgatg aggtactggg gtgtgatgtt 1740 gagagtcaac gaaatagcat gtactttaag gacattgttg ccttgcagtt tgcttttcgt 1800 cttattggtg gaccagaatt ctccgacttt gtgatggctt acaaaggtac tttgtatcgc 1860 tgttatgtgg aagcgactaa gagacatact tcgatgttgg agcagtttca cgttaatgaa 1920 gatcagaaga gaagaaacga gaaggcgtta gagtggttgc ttatgctggg gcaaggagct 1980 ttcgtttttt ctgctgctgt aacagctggt gttacgatct tcaagattca taaatggata 2040 aaaagtcgta tgctcttaag ggctctgcaa atgctaccgt ctgttggtgg tggtggtaac 2100 gaaggtggtg gtagattttc tgaggaggct cttaacagat ttgcagcaag tcaaactttt 2160 gaggaacgca ttgaggctct gcatactgat ttcgacacgg ctgctgatga catggaaagt 2220 ttttcaccag aagacat 2237 //