ID AJ298069; SV 1; linear; genomic RNA; STD; VRL; 3654 BP. XX AC AJ298069; XX DT 06-JUN-2001 (Rel. 68, Created) DT 27-JUN-2005 (Rel. 84, Last updated, Version 3) XX DE Soil-borne wheat mosaic virus ORF1, ORF1 readthrough and ORF3, genomic DE segment RNA2, (Wiltshire, UK) XX KW ORF1; ORF3; coat protein; ORF1 readthrough. XX OS Soil-borne wheat mosaic virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Martellivirales; Virgaviridae; Furovirus. XX RN [1] RP 1-3654 RA Clover G.R.; RT ; RL Submitted (04-DEC-2000) to the INSDC. RL Clover G.R., Plant Health, Central Science Laboratory, Sand Hutton. York, RL N. Yorkshire, YO41 1LZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1016/j.jviromet.2004.08.013. RX PUBMED; 15488626. RA Ratti R., Budge G., Ward L., Clover G., Rubies-Autonell C., Henry C.; RT "Detection and relative quantitation of Soil-borne cereal mosaic virus RT (SBCMV) and Polymyxa graminis in winter wheat using real-time PCR RT (TaqMan)"; RL J. Virol. Methods 122(1):95-103(2004). XX DR MD5; d2ea01d30b6f2fbd857b6eba22b439cc. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01082; SBWMV1_UPD-PKh. DR RFAM; RF01103; UPD-PKc. DR RFAM; RF01107; SBRMV1_UPD-PKf. DR RFAM; RF01109; SBRMV1_UPD-PKd. DR RFAM; RF01112; UPD-PKg. XX FH Key Location/Qualifiers FH FT source 1..3654 FT /organism="Soil-borne wheat mosaic virus" FT /mol_type="genomic RNA" FT /country="United Kingdom:Wiltshire" FT /note="RNA2" FT /db_xref="taxon:28375" FT CDS 193..2577 FT /transl_except=(pos:841..843,aa:OTHER) FT /function="virion assembly and fungus transmission" FT /note="ORF1 readthrough" FT /note="putative translation initiation site at position FT 313" FT /db_xref="GOA:Q91DN0" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q91DN0" FT /protein_id="CAC40959.1" FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAKRGTTPTTNQV FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWEGTSXRDGVS FT GKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEIIYAELEDKLLSFESSVYHP FT KAVTMETEVSVLPKLQTDLETGNAEEDIETTVVTEVLIDEESSYFWLYLVFLLLSILIS FT CFIALSRWFICFLGNRGGRGGPFFRRIATALWSARLWLLSKAARRYGNLGIVRKRYTRA FT GVRRYLRDYNFQFDEWESVVDCAPSEALIVADQRMFVRAVNKIVDLKGDFDAIEIVKKT FT FLNYGVRNYKVERWLNRHTIRSALGVLSDVTKREVLTLTDGMLSLENATLDEVLGCDVE FT SQRNSMYFKDIVALQFAFRLIGAPEFSDFVMAYKGTLDRCYVEATKRHTSMLEQFHVNE FT DQKRRNEKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWIKSRMLLRALQMLPSVGGGG FT NEGGGRFSEEALNRFAASQTPEERIEALHTDFDTAADDMESFSPEDMQAEIRHVIQAHV FT DGTYHAADLPFLGDMSDAVVPAMADSVVDLSNVSSDVGSVDTSVSSVTSKVRRRAVASN FT TRIYPSVGNVRYSDIKSPRVSGKSGISSMKMKITSRPMLAS" FT CDS 193..843 FT /product="coat protein" FT /note="ORF1" FT /note="putative translation initiation site at position FT 313" FT /db_xref="GOA:Q91DM9" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q91DM9" FT /protein_id="CAC40960.1" FT /translation="MDKLTRLKGEVDRSLQKAADKVTAESTESLQSKVVVQLPQMAVKN FT GYTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILTHLGVMLNGVSKLGERNFFS FT RQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKGEGSQTRNAKRGTTPTTNQV FT EGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDSFEAKFNLKWEGTS" FT CDS 2647..3144 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/TrEMBL:Q779A2" FT /protein_id="CAC40961.1" FT /translation="MSACAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLSVVKCRLPAD FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE FT FLKTQIRVLSETANANTAPVYAPTKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS FT PK" XX SQ Sequence 3654 BP; 976 A; 632 C; 964 G; 1082 T; 0 other; ttacgttgag tgttaactct tcttgtgata ttacctttct taccaggata agaaataaaa 60 tattttctgg gttatcatta tctcgaaact tagcagagac taacatctcg ctgctctagg 120 cctgcaatgc aataaatcct aggtagtcag ctgttagcgt gtgacgttga aggatagtgt 180 tatttcggtt cgctggataa gcttacgaga cttaaaggtg aggtcgacag gtccttacaa 240 aaggctgcgg ataaggtcac tgctgaaagt actgaatcgt tacaatcgaa agtggttgtg 300 cagttacctc aaatggctgt caagaacggt tatacgggtt acaacaagga attgaatttg 360 atggcatcta ttcatccttt cattaggctg ggtactttga taagtcagat tgagggatgg 420 caagcaacac gagctagcat acttacccat ttaggtgtaa tgctcaacgg tgttagtaag 480 ttaggtgagc gaaatttttt ctctagacag aaaagatttg ggacacacac tcaggacggt 540 gacgagatat tttgtgacct tggaggtgag gcagttatgc aaatcatcac cagactcaca 600 gtatcactac aatccgcgaa gggtgagggt tcccagacca gaaatgctaa gagagggacg 660 acgccgacta ccaaccaagt tgagggtgag gaacaaggtc aaactgatca gacgttagcc 720 atttcgaatg cgctggctga atttatgact ttcatccaca ctaaagattt cacgacgaat 780 gagtgttaca cgcaagactc ttttgaagcc aaatttaatt tgaagtggga aggtacgagt 840 tgacgggacg gcgtctcggg aaagttgagg gcacgcattg tcgaagattt ccagaatagg 900 ctggttttgg ccgacgattt gggtgttttt ccgagacgca atcttagcgg tgaggtgata 960 agggacgagc ctgagataat atatgcagaa ctagaggaca agctcttgag ctttgagagt 1020 tctgtatatc atcctaaagc tgtgactatg gagacagaag tgtctgtatt gccgaaattg 1080 caaacggatc ttgaaacagg taacgctgaa gaagacattg agacaactgt ggttactgag 1140 gtactcatcg atgaggaaag cagttacttc tggttatacc tcgtatttct cttattgtct 1200 atccttatat cgtgtttcat tgcgctgtcg cgatggttta tatgttttct cggtaataga 1260 ggagggcgcg gtggcccttt ctttcggaga atagccactg cattgtggag cgcgcgactg 1320 tggctgttaa gtaaggcggc cagacgttac ggcaatcttg gaatcgtacg aaagagatat 1380 acacgtgctg gcgtgcgcag gtacttgcgt gattataatt tccaatttga tgaatgggaa 1440 agcgtggttg actgtgctcc gagtgaagct ctaatcgtcg cagatcagag aatgtttgtg 1500 agggctgtga acaagattgt ggatttaaag ggtgattttg atgctattga aattgttaag 1560 aagactttcc tgaattacgg agtccgcaat tacaaagtgg aaagatggtt gaacaggcat 1620 acaatacgct cggcacttgg tgtactgagc gatgttacga agagagaagt acttacatta 1680 actgatggta tgctatcatt ggagaacgct acgcttgatg aggtactggg gtgtgatgtt 1740 gagagtcaac gaaatagcat gtactttaag gacattgttg ccttgcagtt tgcttttcgt 1800 cttattggtg caccagaatt ctccgacttt gtgatggctt acaaaggtac tttggatcgc 1860 tgttatgtgg aagcgactaa gagacatact tcgatgttgg agcagtttca tgttaacgaa 1920 gatcagaaga gaagaaacga gaaggcgtta gagtggttgc ttatgctggg gcaaggagct 1980 ttcgtttttt ctgctgctgt aacagctggt gttacgatct tcaagattca taaatggata 2040 aaaagtcgta tgctcttaag ggctctgcaa atgctaccgt ctgttggtgg tggtggtaac 2100 gaaggtggtg gtagattttc tgaggaggct cttaacagat ttgcagcaag tcaaactcct 2160 gaggaacgca ttgaggctct gcatactgat ttcgacacgg ctgctgatga catggaaagt 2220 ttttcaccag aagacatgca ggctgagatt agacatgtta ttcaagctca cgttgatgga 2280 acttatcacg cagcagatct tccttttctg ggcgacatgt ctgatgctgt tgttcctgct 2340 atggcagatt ctgttgtcga tttgagtaat gttagtagtg atgtgggaag tgtggatacg 2400 tctgtttcaa gtgtgactag taaggttaga cgtcgtgccg ttgctagcaa cacgaggatt 2460 tacccgagtg ttggtaatgt taggtatagt gatattaagt caccgagggt tagtggtaaa 2520 agtggaatta gtagtatgaa aatgaaaatc actagtaggc ctatgttggc gtcctagtgt 2580 gttgttttta aaattacttg ttcacaccgc taccgctggt ctttctcggt ctttcttcct 2640 aacattatgt cggcttgcgc ttttcactct tgcgataagt gtgttgatgg acccaagaac 2700 gttgtatgtg ttagtaaata ccgtcatagt gtttataagg ttttgggcct ttctgttgtt 2760 aagtgtcgtc ttcctgcaga ttgtggtgtt aattgtggta tgcctgcagc ttttgttctc 2820 gaagatgggc atcctagact aactcttgat ggttactgtg gtgagaaaca caaaggttac 2880 gttatttctg gtgcttggcg acatgcgcaa cttcgtactt taaatgatga acttgataag 2940 ttggagaaga ggggggagtt tttgaaaact cagataagag tgctcagtga aactgctaac 3000 gctaacactg ctcctgtata tgctcccacg aaaattaatc gtatgaaggc ggaggttcag 3060 gatgttaatg taaaaatcca ggaccgtagt actgctcttg caggtgtcat ggatgctgtc 3120 gcgttgaatt tatcaccgaa atagttcgcc acggaagtgt ggagccatat gatgagtacg 3180 ttaacgttgt atttgtataa tggatatatg tgtgtaccgg aataggtaac caggataaag 3240 aaccctagcg aaaatgtcct acaaaaacat tatgcattgt ggttttgttg tgtggtttat 3300 ttttgcttat attgctatgt tgcatgtgtg tgttaaaaat agtctaacat gtcgggcaga 3360 gacacgtcgt tgccgtcacg atagacggag ccgctgggat tgcggattat aaatcgaaca 3420 agcctatttg tacgggttga gtacaaacgt ggccatcacg atagatggtt ctgtttttcg 3480 aacagatgta aatcggaggc gtcgtgcagt acggtaaact gcacatctat cctctagttt 3540 ctattgatgt aattgaaaaa agatcaatat tttacgatga tgaggagcga ctggtggtcg 3600 cggtagctat gacacagcta ctaagagggg ttcaaatccc cccccgaacc ggag 3654 //