ID AJ298068; SV 1; linear; genomic RNA; STD; VRL; 6981 BP. XX AC AJ298068; XX DT 06-JUN-2001 (Rel. 68, Created) DT 27-JUN-2005 (Rel. 84, Last updated, Version 3) XX DE Soil-borne wheat mosaic virus ORF1, ORF1 readthrough and ORF3, genomic DE segment RNA1, (Wiltshire, UK) XX KW movement protein; ORF1; ORF1 readthrough; ORF3; replicase; KW replication protein. XX OS Soil-borne wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-6981 RA Clover G.R.; RT ; RL Submitted (04-DEC-2000) to the INSDC. RL Clover G.R., Plant Health, Central Science Laboratory, Sand Hutton. York, RL N. Yorkshire, YO41 1LZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1016/j.jviromet.2004.08.013. RX PUBMED; 15488626. RA Ratti R., Budge G., Ward L., Clover G., Rubies-Autonell C., Henry C.; RT "Detection and relative quantitation of Soil-borne cereal mosaic virus RT (SBCMV) and Polymyxa graminis in winter wheat using real-time PCR RT (TaqMan)"; RL J. Virol. Methods 122(1):95-103(2004). XX DR MD5; e33d9ea16ebf030829aa00d4ed719905. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01103; UPD-PKc. DR RFAM; RF01107; SBRMV1_UPD-PKf. DR RFAM; RF01109; SBRMV1_UPD-PKd. DR RFAM; RF01112; UPD-PKg. XX FH Key Location/Qualifiers FH FT source 1..6981 FT /organism="Soil-borne wheat mosaic virus" FT /mol_type="genomic RNA" FT /country="United Kingdom:Wiltshire" FT /note="RNA1" FT /db_xref="taxon:28375" FT CDS 79..5529 FT /transl_except=(pos:4003..4005,aa:OTHER) FT /product="replication protein" FT /note="ORF1 readthrough" FT /note="opal termination codon 4003-4006" FT /db_xref="GOA:Q91DN3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91DN3" FT /protein_id="CAC40981.1" FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKRAWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK FT ETIPVEVGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMA FT IHSIYDIDLMDLANALEEKRVRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKY FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN FT GVVQDESFKCIPMEDNGNVVFPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQ FT LTAENVNTYLTSTNNTIIIGGSSKKNVNKVDSLLIAQITTTLVVWTELMHARQKRVMEL FT LRLQMKEDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG FT TSERACDVVRTDNRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDDAESKYVWCAKL FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKREKNDAEVTTDGTSGFVGTERKEFD FT AAVDFLTVAGNKITDELKAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE FT EEETTAPVADITDHASVIEENFENLQHGSSSNSTPIVVARENLFVRNDMGPSAVTSDDC FT STEGELREKSWASLAEGESDSSYYLNTAIISGKVQKSALPKAPDFSKYATFQAKAKQEA FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSRF FT GHSYGVGFSLNSKREITKCELVKLMWNYDGRGQISQKPVNTKAFSYLLLSELTFMMNEL FT LIFCNLQKVIKKKERTKHALITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK FT EKFAKRLRCTESALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK FT RVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRNRGPVNV FT NTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF FT SDINDMRDVMEDKLMKNLSSELAKXRFGSKYESILICDREVRVPDVGNSVILQDFYDRV FT LPGNSTMDSHFDGYEVATTDITIEVENCKVHPHKNVKVWQDKRGLIPVLRTAMPPKRQN FT GMVEALLALKKRNMAAPKLQEAVNEFEVIDRTISRARSIFLNEDMIDESLVSTRESNMR FT WWEKQSHTARQQLKSEYRVLHELDLCKYSHNIKGDEKPKNDLTPQREYGALQTVVYPDK FT IVNALFGPVMKEINERIRMALKPHVVYNSRMNAEELNRTVEFLDPEDEYDAFEIDFSKF FT DKSKTSLHIRAVIELYKLFGLDDMLSLLWEKSQCQTTVIDRTNGITAYLLYQQKSGNCD FT TYGSNTWSAALALLESMPLEKAKFMIFGGDDSLILFPKQLCIEDPCRRLASLWNFDCKL FT FNFRHNMFCGKFLLKIGNKFKFAPDPMKLLTKLGRKDIADGKSLSEIFVSMGDNYCSYR FT DYRILEQLAVAVQERYRTNEDPTAMLITLKKYIFDFKLLASLFNYSGEFEVCKVGRNFE FT W" FT CDS 79..4005 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:Q91DN2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91DN2" FT /protein_id="CAC40982.1" FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKRAWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK FT ETIPVEVGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMA FT IHSIYDIDLMDLANALEEKRVRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKY FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN FT GVVQDESFKCIPMEDNGNVVFPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQ FT LTAENVNTYLTSTNNTIIIGGSSKKNVNKVDSLLIAQITTTLVVWTELMHARQKRVMEL FT LRLQMKEDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG FT TSERACDVVRTDNRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDDAESKYVWCAKL FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKREKNDAEVTTDGTSGFVGTERKEFD FT AAVDFLTVAGNKITDELKAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE FT EEETTAPVADITDHASVIEENFENLQHGSSSNSTPIVVARENLFVRNDMGPSAVTSDDC FT STEGELREKSWASLAEGESDSSYYLNTAIISGKVQKSALPKAPDFSKYATFQAKAKQEA FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSRF FT GHSYGVGFSLNSKREITKCELVKLMWNYDGRGQISQKPVNTKAFSYLLLSELTFMMNEL FT LIFCNLQKVIKKKERTKHALITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK FT EKFAKRLRCTESALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK FT RVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRNRGPVNV FT NTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF FT SDINDMRDVMEDKLMKNLSSELAK" FT CDS 5591..6571 FT /product="putative movement protein" FT /note="ORF3" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q91DN1" FT /protein_id="CAC40983.1" FT /translation="MGSKDVKGDSFESVYNKILDLQTEGAVGADSLKTNRQRSFNIENK FT YVEKALVQQDIATKMREGWTTWTKTNKEEGTPYNMSYSCVLLNVIPTVPRGYSGTVEIS FT LIDSGLSPLENVIPDQTQMMELGNGPHVMCFFMHYGIPLNDEGRVIKLSFKIEAEMASK FT KMSVMNVYSYWTQKQGHLSVYTEPQRSTCSKLLLGYDKSLKLKTRDDVRRFVSRSLATN FT NLEQSVPKMLPNSINILKENVPLFKKESVLDLTEQEREKQKKLETLRSVNEAQRRKSAQ FT EMQKRNDDLIKANVQKQKAKQSEIDENRKNHYDVSGVKFGSVGSD" XX SQ Sequence 6981 BP; 2022 A; 1161 C; 1855 G; 1943 T; 0 other; aacacaagtg ttaacgaaat acagatcttg tcagacaaag gcacgcttcg gcgataaatc 60 ctttgtttac aagacacaat gccgattgat agcagttcaa tattgggtat tatcagtgag 120 gaggatgttg tgcgggctgc aatcagcact agtgccacga aattcggttc gcaattacat 180 ggtacagtgt gtgatcatgt gaaggagaca tatcttgacg cggttgaaag acaaaaaata 240 aaaaagaaaa ttgacgttcg tagggaccta tcacaagagc agctgcagtt gctgaacgat 300 ttgtatcccg aacgacacat cgtttctagc aattgcgaac gcggtacaca tagctttgca 360 gcggcttcta ggaagatcga gacggacttg ttgttaagtc gaataccaaa aagggcgtgg 420 gtttacgata ttggtggcaa ttgggcgaca catgtgaagc ggaacgatgg taggaaagtt 480 cactgttgct gtccgacgtt ggacattcgt gacgctggtc ggaagacgac tcgatgggct 540 tctattgaga aataccaaga cgaaaaggaa acgattcctg ttgaagtcgg agagaaactc 600 aagagaatac aggaggacga gaatagcatc tatgctaatc ttaaagctgg cagatgccaa 660 ccagaggatc tcaatgggaa gtggtattgt ggtaataagt tcgaggagtg cgtgttcacg 720 gctgaaagag cttatgccat ggctatacac agtatttatg acattgatct gatggacttg 780 gccaatgctt tagaagaaaa acgtgtaagg ataatgagtg gcacgtttct gttttcagtg 840 gatctactgc tgggaaaaaa acaggggaga cttccaacga tggacggttt tttcgaggtg 900 gagggtgatt acgttaagta tggttttcat aatgacacca atccgggtta caagcacaaa 960 ctgagtcagt tgatgaagta tcttacgaaa acctttgtga ctgctaaagg gggttcgata 1020 tattatcttg aactgacaga gttgcgaggt gacgtgatgt tttttactat gacggacgcg 1080 acggaggcta ggatgaatgg tgtggttcag gatgagtctt tcaagtgcat acctatggaa 1140 gacaacggaa atgtggtatt tcctttgttt gaagtagaca agcgtagcga tacgctttgc 1200 ttctcggaga ttttgctacc ccgtgatttt gtgcagaggg cggttgagta taccggccgt 1260 ttgaaaggga atcaactcac tgcggaaaac gtaaacacat atctgacgtc gaccaataat 1320 accattatta ttggcggttc gtcaaagaaa aatgtgaaca aggttgattc actgctgata 1380 gcacagataa ctacgacgtt ggtagtttgg actgaactga tgcatgcgag gcagaagcga 1440 gttatggagt tgctgaggtt gcagatgaag gaagacgtgg attttaagtc tttggcacat 1500 gctgcatttc tgaaagtgtt cggtaaggtg agtttctacc aaaaggcgtt gaggagtttc 1560 gcgaattgga tttcatattg tcatggctct gacgctatac attttcgccc tgtgccactg 1620 tacgttgaaa taaccgacag agtgaaattg tggaaaactt atgcaccgaa tcagggattc 1680 gtattggaca tggaagattt ggacgagaag ataaaactgc atgagataac cgagagggaa 1740 aagtacgatg ttagtagaca cattgtgtct actaaacttg gcgagttggc tactggagat 1800 tatggtacat ccgaaagagc ttgtgatgtg gtgcgcactg ataaccggag aaaaaccgat 1860 tttggtgatc tgttggaagg agaggtggcc acaaacttca ttgactcttg gtgcgaaaaa 1920 gatgatcatt ttaacttttc ttatgatgat gctgaatcaa agtacgtgtg gtgtgcaaag 1980 ttgctgagaa tggtgtggga tactttgatc cctcccatgg aatttgcgcc cgtttatgtg 2040 gatgacaagg acgcgtcgat tcgcattgca tcgagaattg agaagagaga gaaaaatgat 2100 gctgaggtta ctactgatgg tacctctgga tttgttggca ctgagaggaa agagtttgac 2160 gctgctgtgg attttctgac ggttgctggg aacaaaatta cggatgaact gaaagctcag 2220 agaacagagg tcgttgctgt ggctaacgcg gtagtcgcgc agaataagct gtacacggaa 2280 tctgaggtgt ctaatgcagt gaagctttgg gctgatgttg atgacgaatt tctggaagaa 2340 gaagagacaa ctgctcccgt ggcggacatt actgatcacg cttctgtaat tgaagagaat 2400 tttgagaatt tgcaacacgg tagctcttct aactctacgc caatcgttgt ggcaagagag 2460 aatctgtttg tgcgtaacga catgggtccc tcggcagtga ctagcgatga ttgttcgact 2520 gagggtgaac ttagggaaaa atcttgggca tctttggcag agggagagag cgattcgtct 2580 tactacttga atactgcgat tatttcgggc aaagtacaga aaagtgcact accaaaagct 2640 ccagattttt cgaagtatgc gacgtttcaa gcgaaggcga aacaggaggc tttgtggtac 2700 ttgcaatgca agatcgtttc tgatcgtacg acattgcgga gcatcataga cgatcatttg 2760 agaggtatgt ttcacaatga tacttgtgag ttgcctaagg attcagcttt tttggactac 2820 acgactgata acggtggtgc ttggatgtat gggaaaccat ccagatttgg gcacagttac 2880 ggtgtgggtt tttcattgaa ttcgaagcgg gagattacca agtgtgagtt agtgaaactg 2940 atgtggaact atgatggcag ggggcagata agtcaaaaac ctgtgaacac gaaagctttt 3000 tcgtatctgt tgctgagtga attgacattt atgatgaacg aattgctcat tttctgcaat 3060 ttgcagaagg ttattaagaa gaaggaacgg acaaaacacg cccttattac tttacgggac 3120 ggtgttccag gttgcggcaa atctacttgg attgttgaga acgcaaaccc catgaaagat 3180 atggtgttgt ccatgtgcaa ggaagcgact gaagatttga aagaaaaatt tgcgaagaga 3240 ttaagatgta cggaatcggc gttgaggagg gtgcgaactg tggattcttt tctgatgcat 3300 gattatgata aattcagggc agcgacggtt cacttcgacg aagcgctgat ggcgcatgcg 3360 ggaatggttt acttctgtgc ggatattttg ggtgcaaaac gagtgctgtg ccaaggagac 3420 tcacaacaga ttccatttat aaatcgtgtt gaatctatca ctctgaaata cgcaaaattg 3480 cagattgatg atacggagta tgtgagattg acttatcgat cgcctattga tgttgcacac 3540 tatctcacga agaagtctta ttatagtgga ggtagggtgc ttacgaagaa cacaactctg 3600 agatctatga acactgttgg ccctcgcgat gcgaagccta tgacatctgt gcattgtgtt 3660 ccctaccatc gtgatactca atatctaacg ttcactcagt cggagaaagc tgacctttat 3720 aaggcactgc gaaacagggg gccggtaaat gtgaataccg tgcacgagac acagggtaag 3780 acgtttgacg atgtaatcgt ggtgaggctg aagacgacgg aaaatgagat ttatcccggg 3840 ggaaggaagg ctcaaccata tgagattgtg gcgactacga ggcatagacg ttcgttggtg 3900 tactatactg cgattgagga caggctgttt tctgatatca atgacatgcg ggatgtgatg 3960 gaagacaaat tgatgaagaa ccttagctct gagttggcga aatgacggtt tgggtcgaag 4020 tatgaatcca tattgatttg cgatagggaa gtgagggttc ccgacgtggg aaattctgtt 4080 attttgcagg atttttacga tagggttcta cctggaaatt ctacaatgga ttcacacttc 4140 gacgggtatg aagtggcaac gacagacatt actatagagg ttgaaaattg taaggttcac 4200 ccgcataaga atgtgaaagt ttggcaagat aaacggggtc tgattcccgt tttgcgcact 4260 gcaatgccac cgaaaaggca gaatggcatg gtggaagcac ttttggcgtt gaagaaaaga 4320 aacatggctg caccgaagct acaagaagct gtgaatgaat tcgaggtaat agatcggact 4380 attagtcgcg ctagatcaat tttcttgaat gaagacatga ttgacgaatc gttggtctcg 4440 acgcgtgagt caaatatgcg ttggtgggaa aaacagtcac atacagctag gcagcaattg 4500 aaaagcgagt acagggtgct gcatgagttg gacttatgca aatattctca taatattaaa 4560 ggggatgaaa aaccaaagaa tgatttgaca cctcaacgtg aatatggcgc tttgcagaca 4620 gttgtttatc ctgataagat tgttaatgcg ctgttcggac ctgttatgaa ggagataaat 4680 gagcgtataa gaatggcttt gaaacctcac gtggtttaca actcaaggat gaatgccgaa 4740 gagttgaatc ggactgtcga atttctggat ccggaagatg agtatgacgc attcgaaata 4800 gatttttcaa aattcgacaa atcgaaaaca tcattgcata tacgagctgt aattgagttg 4860 tataagttgt ttggtttgga tgatatgttg tccttacttt gggaaaaatc tcaatgtcag 4920 accactgtta ttgacagaac aaacggcatt actgcttatt tgttgtacca gcagaaatct 4980 ggtaattgtg acacttatgg ttctaacacg tggtcggccg ctctggcgtt gttggagtct 5040 atgccattgg agaaagctaa atttatgatt tttggcgggg atgactctct gattttgttt 5100 cctaaacaac tctgcattga ggatccgtgt agacgcttgg catctctgtg gaacttcgat 5160 tgtaagttgt ttaacttcag gcataatatg ttttgtggta agtttttgtt gaagatcgga 5220 aacaagttta aattcgctcc agatccgatg aagttgttga cgaagttggg acgtaaggat 5280 attgcagatg gtaagtcact ctctgagatt tttgtttcta tgggagataa ttactgctct 5340 taccgggact atcgtatttt ggagcaactt gcggtggctg tgcaagaaag gtacaggacg 5400 aatgaggacc ctaccgcgat gttgatcact ttgaagaagt atatttttga ttttaagctg 5460 ttggctagtt tgtttaatta tagtggtgag tttgaagtgt gtaaagtggg gaggaacttt 5520 gagtggtgac tcgctgttct cgttgttttt cttctgtgta ttctattgtg ttaaacgttg 5580 cgttacagcc atgggttcaa aggatgtgaa gggtgactct ttcgaaagtg tgtataacaa 5640 gattttggac ttacaaactg agggagctgt tggtgctgat agtcttaaga ccaatcgtca 5700 gcggagtttt aatatcgaga acaaatacgt tgaaaaagct ctggttcaac aggatattgc 5760 gacaaagatg agagaaggat ggaccacttg gactaagact aataaggagg aaggaacgcc 5820 ttataatatg tcttatagct gcgtactgct gaacgtcatt ccaaccgtac cgcggggtta 5880 ttctggcaca gttgaaattt cgttaattga ttcgggcctg tcaccgcttg aaaatgttat 5940 tccggatcag acgcagatga tggaacttgg aaatggaccg catgtgatgt gttttttcat 6000 gcactacggt ataccgctca atgatgaagg cagggtgatt aagctgtcat ttaaaattga 6060 agcagaaatg gcttcaaaga agatgagtgt tatgaatgtt tactcctatt ggacgcaaaa 6120 acaaggacat ttatctgttt acactgaacc acagcgatcg acatgttcga aacttttact 6180 tggttacgac aaatcactga aattgaagac tagggatgac gtgcggcgtt ttgtttcacg 6240 gtcactagca accaataatc ttgagcaaag cgtacctaaa atgcttccca acagcattaa 6300 cattcttaaa gagaacgtac ctcttttcaa aaaagagagc gtgttggatt tgacggaaca 6360 ggagagggag aagcagaaaa agcttgaaac cttgagaagt gttaatgagg cacagagacg 6420 taagagtgca caggagatgc agaagagaaa tgatgatttg attaaggcga atgtgcaaaa 6480 gcaaaaggcc aagcaatctg aaattgatga gaacaggaaa aatcactatg atgtttcggg 6540 tgtgaagttt ggttcagttg gaagtgactg agtttgtttt tcttttatgt atttatatat 6600 gtattgtggt ttgtcgtgtg gtttattttt agcttatatt gctatattgc atgtgtgcgt 6660 tgaaaatagt ctaacttgtc ggacagagac aagtcgttgc cgtcacgata gacggagccg 6720 ctgggattgc ggattataaa tcgaacaagc ctatttgtac gggttgagta caaacgtggc 6780 catcacgata gatggttctg tttttcgaac agatgtaaat cgaagacgtc gtgcagtacg 6840 ttaaactgca catccatcct ctagtttcta ttgatgtaat tgaaaaaaga tcaatatttt 6900 acaatgatga ggagcgactg gtggtcgcgg tagctttgac acagctacta agaggggttc 6960 aaatcccccc ccgaaccgga g 6981 //