ID   AJ297630; SV 1; linear; genomic RNA; STD; VRL; 1703 BP.
XX
AC   AJ297630;
XX
DT   24-AUG-2000 (Rel. 64, Created)
DT   11-MAY-2001 (Rel. 67, Last updated, Version 4)
XX
DE   Lettuce mosaic virus genomic RNA for partial NIb replicase and coat
DE   protein, isolate Yuhang
XX
KW   coat protein; NIb replicase; polyprotein.
XX
OS   Lettuce mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1703
RA   Adams M.J.;
RT   ;
RL   Submitted (24-AUG-2000) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RX   DOI; 10.1007/s007050170144.
RX   PUBMED; 11402861.
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146(4):757-766(2001).
XX
DR   MD5; 4844ba04cb885926ac11bcdce449c591.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1703
FT                   /organism="Lettuce mosaic virus"
FT                   /host="lettuce"
FT                   /isolate="Yuhang"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12202"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9EAE7"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q9EAE7"
FT                   /protein_id="CAC05296.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAMTYTLHKLGFEDEEQDSMCKYFVNG
FT                   DDLIIAIKPEHESLLDQFQHCFKSLGLNYDFNSRTRKKEELWFMSHCGIQKDGIFIPKL
FT                   EPERIVSILEWDRSDQPVHRLEAICAAMIESWGYDKLTHEIRKFYKWCLEQAPYADLAK
FT                   AGKAPYIAECALKRLYTSKEASEAELEKYMEAIRNLVNDEDDDDMDEVYHQVDAKLDAG
FT                   QGSKTDDKQKNSADPKDNIITEKGSGSGQMKKDDDINAGLHGKHTIPRTKAITQKMKLP
FT                   MIRGKVALNLDHLLEYEPNQRDISNTRATQKQYESWYDGVKNDYDVDDSGMQLILNGLM
FT                   VWCIENGTSPNINGTWVMMDGEEQVEYALKPIIEHAKPTFRQIMAHFSDAAEAYIEMRN
FT                   KKKPYMPRYGRLRGLNDMGLARYAFDFYETTSATPNRAREAHNQMKAAALVGTQNRLFG
FT                   MDGGGSTQEENTERHTAADVNQNMHTLLGVRGLH"
FT   mat_peptide     <1..642
FT                   /product="NIb replicase"
FT   mat_peptide     643..1476
FT                   /product="coat protein"
FT   3'UTR           1480..1703
FT   polyA_site      1689
XX
SQ   Sequence 1703 BP; 561 A; 341 C; 425 G; 376 T; 0 other;
     ggaaacaata gtggtcagcc atccacggta gtagacaaca cattgatggt tgtgttggct        60
     atgacataca cgctgcacaa gttaggcttt gaagatgagg aacaagactc tatgtgcaaa       120
     tacttcgtca atggagacga cctgatcatc gcgataaaac cagaacacga atcattactg       180
     gatcagttcc aacactgttt caaaagtttg ggcctaaatt acgatttcaa ctcacgaacg       240
     aggaagaagg aagaattgtg gttcatgtca cattgcggca tccagaaaga cggaattttc       300
     attccaaaac tcgaaccaga gcgcattgtg tcaatcctag agtgggatag gtcagaccag       360
     ccagtgcatc gcttagaggc catatgtgca gcaatgatcg aatcatgggg ttacgacaaa       420
     ttaacccatg aaattcgaaa attctacaag tggtgcctgg aacaagcgcc atatgctgat       480
     ttggcgaaag cgggaaaagc accgtacata gcagagtgcg ctcttaaacg actatacacc       540
     agcaaggaag ccagcgaagc ggagttagaa aaatacatgg aagctatacg caatcttgtc       600
     aatgatgaag atgacgatga tatggatgag gtctatcatc aagtagacgc aaagcttgat       660
     gcaggccaag gcagtaaaac tgatgataag caaaagaact cagcggatcc aaaggataat       720
     atcatcacag agaaaggaag tggttctggg cagatgaaga aggatgacga catcaacgca       780
     gggctacatg gaaaacacac catacctcgt acaaaggcaa tcacacagaa aatgaagtta       840
     ccaatgatcc gaggtaaagt ggctttaaac cttgatcatt tgctggagta cgaaccaaac       900
     cagagagaca tatcgaacac acgtgcaacc cagaaacagt acgagtcatg gtacgacggg       960
     gttaagaatg actacgatgt ggatgatagt ggcatgcaat taattctgaa cggattgatg      1020
     gtttggtgta tagaaaacgg gacatccccg aatataaatg gaacatgggt gatgatggat      1080
     ggcgaagaac aagtagaata tgctctaaaa cccatcatcg aacacgcgaa acccacgttt      1140
     cgccagataa tggcccactt cagtgacgca gccgaggcgt acattgagat gagaaacaag      1200
     aagaaaccgt atatgccacg atacggacgg ctacgaggct tgaacgatat ggggctagct      1260
     cgctatgctt tcgacttcta cgaaacaaca tcagcgaccc caaatcgggc aagagaggcg      1320
     cacaatcaaa tgaaggcagc tgctctagtg ggaacacaga acagactgtt tggaatggac      1380
     ggaggcggtt caacccagga agagaacacg gagaggcaca cagccgcaga tgtaaatcag      1440
     aatatgcata ctctcttagg cgtgagaggg ttgcactaaa ggcgtgtgtt ggcatttaaa      1500
     gactgtagta taaatctata atatagtgag tgtttcactc cttttatgtt tatgtatgca      1560
     cttatttgtc cgttagtatt ctctccctgt acttcgctcg tgagggcgta ggttcagctg      1620
     agggcttttc tagtttccgc tgtgaggttt tacctcgaag gttgctagtc tggttttcag      1680
     tcggagacaa aaaaaaaaaa aaa                                              1703
//