ID   AJ297629; SV 2; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   AJ297629;
XX
DT   24-AUG-2000 (Rel. 64, Created)
DT   03-AUG-2001 (Rel. 68, Last updated, Version 5)
XX
DE   Turnip mosaic virus genomic RNA for partial NIb replicase and coat protein,
DE   isolate Wenzhou
XX
KW   coat protein; NIb replicase; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RC   Revised by [4]
RA   Adams M.J.;
RT   ;
RL   Submitted (24-AUG-2000) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RX   DOI; 10.1007/s007050170144.
RX   PUBMED; 11402861.
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146(4):757-766(2001).
XX
RN   [4]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (03-AUG-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
DR   MD5; abb6c35a852dc88dfe40739e82183a69.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Turnip mosaic virus"
FT                   /host="Turnip"
FT                   /isolate="Wenzhou"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1500
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9EAA9"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q9EAA9"
FT                   /protein_id="CAC05304.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNG
FT                   DDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGAEACVYHQAGETLDAGLTD
FT                   EQKQAEKEKKEREKAEKERERQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKS
FT                   LTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTPRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..633
FT                   /product="NIb replicase"
FT   mat_peptide     634..1497
FT                   /product="coat protein"
FT   3'UTR           1501..>1709
XX
SQ   Sequence 1709 BP; 525 A; 350 C; 448 G; 386 T; 0 other;
     gggaacaaca gcggacaacc atcgactgtt gtagacaaca cactcatggt catactggca        60
     gtcaactatt cactcaagaa aagtggaatt ccaagtgagc tgcgcgacag catcatcaga       120
     ttcttcgtca acggagatga tttattgcta agcgtacacc cagagtatga gtatatcctt       180
     gacactatgg cagacaactt tcgtgaactg ggcctgaagt atactttcga ctcgaggacc       240
     agggaaaaag gagacctttg gtttatgtcg caccaagggc acaaaagaga gggaatctgg       300
     attcccaagc ttgagccaga gcgaatagta tcaattctag aatgggatcg atcgaaagag       360
     ccatgtcatc gactagaggc aatctgcgca gcgatgattg agtcgtgggg atacgacaag       420
     ttgactcacg agatacgcaa gttttacgcg tggatgattg aacaagctcc atttagctcc       480
     ctagcacaag aagggaaagc tccttacata gcggaaacag cgctgaggaa gctctacctt       540
     gataaggaac cagctcaaga ggatctcacc cattatttgc aagcaatctt tgaggattat       600
     gaagatggtg ctgaggcttg tgtttatcac caggcaggtg aaacgcttga cgcaggtttg       660
     acagacgagc aaaagcaggc ggagaaggag aagaaggaga gagagaaggc agaaaaggaa       720
     cgagagaggc agaagcagtt ggcactcaag aaaggcaagg atgttgcaca agaggaggga       780
     aaacgcgaca aggaagtaaa cgctggaacc tctggaactt tcagtgtacc caggcttaag       840
     agtctgacaa gcaagatgcg cgtgccaaga tacgagcaaa gagtggctct aaacctcgat       900
     catctaatcc tatacacgcc ggagcagacg gatctatcca acacacgctc aacgcgaaag       960
     cagtttgaca catggtttga aggtgtaatg gctgattacg agctgacgga ggacaaaatg      1020
     caaatcattc tcaatggtct aatggtctgg tgcattgaga acggaacctc cccgaacata      1080
     aacggaatgt gggtgatgat ggacggcgat gatcaggtgg aattcccgat caaaccgctc      1140
     attgaccacg ccaaacccac atttaggcag ataatggccc atttcagtga cgtagctgaa      1200
     gcgtacattg aaaagcgtaa ccaagaccga ccatacatgc cacgatatgg tcttcagcgc      1260
     aatttaaccg acatgagctt agctcgatac gcgtttgatt tctatgaaat gactcctaga      1320
     actccaatac gtgcgagaga ggcacacatc cagatgaaag cagcagcact gcgtggcgca      1380
     aataacaatt tgttcggctt ggatggaaac gttggcacaa cggtagagaa cacggagagg      1440
     catacgaccg aggacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga      1500
     agttgtatgc tggtagacta taagtattta agtttactcg ttagtattct cgcttatggg      1560
     aaatatgtaa gtttgttaaa gcagccagtg tgactttgtc atgtgtgttg ttgttacttt      1620
     ctatattttc gccgaacatt ttattggtgt tagcgcatgt ggtgaggatc gtcctcgatt      1680
     gccttaacat ttgataggat gcaagggac                                        1709
//