ID AJ294757; SV 1; linear; genomic RNA; STD; VRL; 4501 BP. XX AC AJ294757; XX DT 14-DEC-2001 (Rel. 70, Created) DT 14-DEC-2001 (Rel. 70, Last updated, Version 1) XX DE Rice black-streaked dwarf virus ORF1 and ORF1r, genomic RNA XX KW ORF1; ORF1R. XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4501 RA Adams M.J.; RT ; RL Submitted (21-SEP-2000) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RA Zhang H., Chen J., Adams M.J.; RT "Sequence of rice black streaked dwarf virus segment 1 from China"; RL Unpublished. XX RN [3] RX DOI; 10.1007/s007050170006. RX PUBMED; 11811683. RA Zhang H., Chen J., Adams M.J.; RT "Molecular characterisation of segments 1 to 6 of Rice black-streaked dwarf RT virus from China provides the complete genome"; RL Arch. Virol. 146(12):2331-2339(2001). XX DR MD5; e4a584c2c097f80244f8c79b18fa6da3. XX FH Key Location/Qualifiers FH FT source 1..4501 FT /organism="Rice black streaked dwarf virus" FT /chromosome="S1" FT /host="rice" FT /mol_type="genomic RNA" FT /country="China:Zhejiang" FT /db_xref="taxon:10990" FT 5'UTR 1..35 FT CDS 36..4430 FT /product="hypothetical protein (P1)" FT /function="putative RNA polymerase" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:Q8UZ08" FT /protein_id="CAC82519.1" FT /translation="MVERKFSRSAEICLKKFESIQQFRQKRQQQEASTDKSHSQNEKTK FT SPGPRTSDSKKDSSTRQNENSSKCSPNFQQAKDEYIQLLHSKDVALDLIIEKAEDIRNV FT FIGELPLTQEVIENNLNDVAVVLNNASDLIFKLFQSDNGILQECVVPVNVIQKDIFPVL FT HPSEIFDYNGFGIDETNNLAISPTIRYLPNWNVQKIRSTIDLLKNDSTVVKARNLASDF FT GLISNTLKRRLLIGIDRMFNKLSIQHRFGTFESQIFSCFLMKQLLTEEQCYVNLPDCVR FT KSKFQKRGIDTVCWQYLRQILLHYNCFPFYHHTHNARFGVLDSTKISIHTDLPVSCILP FT SVLHGLLNEIVSEMLCDLNSDTALIYAKHLMNCSQQSTYQRQLDFKDDFRSWPKLCYDK FT IGYVLAVLYSSDMKPLEQRIEYIDSEFWIDEKEKDTLELSVSKLPEYMKKFVVDSINNC FT VKLGNEVKSKMSSNQNILLSRDLVNEEVISARLLASKNTEFLRWLTMTSTIVSNFGIYN FT KTSLLLEYEKSVGTKQDVMVSKPDCKISIVTEQGMSIPLINDWSKVPILNEMSELFDQN FT WKSDLINEFENIDDFEKRFVTFLTNKSGGQKSEEPTLSKELKGISNARVIAFALNRNDY FT HDEIKFIKMLMAYGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNALKTNKKHNEK FT LQLGNKIGNLLDARVQMCNTGDVSSVKNSGDMKGMDAHTIPNLTLFLRNKMIEVLFELD FT PSKNCSRFFFSEDKEYTLKEKHPQFEEIYNRKLRGVVIHAAKCLFYMFSMNMYLDDHFF FT ADSQTVSDQTFQTGFFATSAQHTLFLSLFLLNLERKFFSVLDNRLVSVMHSVMGDDVLE FT VIKNGVKFPEVVRKWLSLRKNDLSKLNYEEELSLSRMYGVFLQQAALLGVYVPYPSRMS FT LFCDERSDTTKRHTLDMIKIIMDVISAKAQRSYGIDNGLSIGYSIWSCHRSSRYIYSNA FT DKIKISKLIEMNKNFGFNFIVSHNVVEQSIRFIYPFVTVMCSPISWPMLTFAMPDVSDS FT NKILTYRSKAFTSLNGDGAYMLINQMFFTSNEQHMFQFVDYVKHQSKVVELKLNSNFLD FT WETRHKWGFTFGEHLLRFKRLRHLTESRKNELGLGDIEVMVHNLNKYLDSNRVLMSFNS FT ISVLKSHKIEVPYGSMYVNHNRSKIDQSLTVRAESLEERAFLDSVFLKHILDYNVIPKD FT SEVLKTHALCAVKLRIYGDFDYSCERDGVIEPSQDAQFNILLPFLPGYHLNSAYGKLFS FT YSTLPTVHDRDISGTLGEITGSLGASFDVDAAIEFGAHVYNVNPSLVDAAGTAIGIPQG FT LLNHYKNLVNAFVMNNFNLKYHSIFLNVKYFGLNGSLKHFSQYGDYSSRLVRFDSINKL FT DRYHNVFVRDFIFAYIHELNGRRVYLDYSIHSLLLVMSRGSIKYFTSHLSQLFNPMLTL FT EFD" FT CDS complement(1223..1561) FT /product="hypothetical protein (P1r)" FT /function="unknown" FT /note="ORF1r" FT /db_xref="UniProtKB/TrEMBL:Q8UZ07" FT /protein_id="CAC82520.1" FT /translation="MVLVIVNHLRNSVFLLANKRAEITSSFTRSRDNKIFWLEDILDLT FT SFPNFTQLLIESTTNFFMYSGNLLTLNSNVSFSFSSIQNSESIYSILCSNGFISDEYNT FT AKTYPILS" FT 3'UTR 4431..4501 XX SQ Sequence 4501 BP; 1498 A; 644 C; 802 G; 1557 T; 0 other; aagttttttt gccgacctac gtatctcaca gacagatggt ggaacgaaag ttcagtagat 60 ctgcagaaat ttgcttaaag aaatttgaat caatccaaca atttagacaa aagagacaac 120 aacaagaagc aagcacagat aaatcacatt ctcaaaacga aaaaactaaa tcacccggcc 180 cccgtacttc cgacagtaaa aaagattctt caacacgaca aaatgaaaat tcgtccaagt 240 gtagtccaaa ttttcaacaa gccaaagatg agtatattca attattacat tccaaagatg 300 ttgcgctaga tttaattatt gaaaaagctg aagacataag aaatgttttt attggtgaac 360 ttcctctcac tcaagaagtg atagaaaata accttaatga tgttgctgta gtcctgaata 420 atgcaagtga tttaattttt aaattatttc aatcagataa tggaattctt caagagtgtg 480 ttgttccagt caacgtaatc caaaaagata tttttcctgt tttacatcct tctgaaattt 540 ttgattataa tggttttgga atagacgaaa caaacaactt agcaatcagt cctaccattc 600 gatatttacc taattggaat gttcaaaaaa ttcgtagtac cattgatctt ttgaaaaatg 660 atagtacagt tgtcaaagca agaaatttag ctagtgattt tggattgatt agtaatactt 720 tgaaaagaag attgttaatt ggaatagata gaatgtttaa taaattaagc atacaacata 780 gatttggaac gtttgagagt cagattttta gttgcttttt aatgaaacag ttattaacag 840 aagaacaatg ctatgttaat cttcctgatt gtgttagaaa atcgaaattt caaaaaagag 900 gaatagacac tgtttgctgg caatatttaa gacaaattct tcttcactat aattgttttc 960 ctttttacca ccatacgcac aatgctagat ttggagtttt ggacagtacg aaaatttcta 1020 ttcatacaga tttgcctgta tcgtgtattc ttcccagtgt tttacatgga ttattgaatg 1080 aaatagtttc tgaaatgttg tgtgatttaa attctgatac tgctttgata tacgctaaac 1140 atctaatgaa ttgttctcaa caatcaacgt atcaaagaca actcgatttt aaagatgatt 1200 ttcgttcttg gcctaaatta tgttatgata agattggata tgttttagca gtattgtatt 1260 catctgatat gaaaccatta gaacagagaa ttgagtatat tgattctgaa ttttggatag 1320 atgagaaaga aaaggacaca ttagagttga gtgttagtaa attacctgaa tacatgaaaa 1380 agtttgtcgt tgattcaatt aacaattgcg taaagttagg gaatgaggtt aaatctaaaa 1440 tgtcttctaa ccaaaatatt ttattatctc gagatcttgt aaatgaagaa gtgatttcag 1500 cacgtttatt agctagtaaa aacacagagt ttcttaggtg gttaactatg actagtacca 1560 ttgtttctaa cttcggaatc tataataaga cgtcactgtt attagagtat gaaaaatctg 1620 taggtacaaa acaagatgtg atggtatcca aacctgattg taaaattagc attgtaactg 1680 aacaaggaat gagtatccct ttaattaacg attggtcgaa agtacccatt ttaaatgaaa 1740 tgtcagaact gtttgatcaa aattggaaat cagatttaat taatgaattc gaaaatatcg 1800 atgattttga aaagagattt gtaacatttc tgactaataa atcaggtgga cagaaaagtg 1860 aagaacctac tctatcgaaa gagttaaaag gcatttccaa cgctagagtt attgcatttg 1920 ctttgaatag aaatgattat catgatgaga tcaaattcat taaaatgtta atggcttatg 1980 gtaagtgtgc tataagattt caaattgaca ggagagctag agtaattgtt attgttccga 2040 acgctataca atcaagtgaa ctctttttgt tgttaggttt taatgctctt aaaactaata 2100 aaaagcataa tgaaaaattg cagttgggaa acaaaattgg caatctctta gatgctagag 2160 tgcaaatgtg taatacaggt gatgttagtt cagtaaaaaa ttcaggagat atgaaaggta 2220 tggatgctca taccattcca aaccttactt tatttttaag gaataaaatg attgaagtgc 2280 ttttcgaatt ggatccaagt aaaaactgtt ccagattctt ttttagtgaa gataaggaat 2340 atactttgaa agaaaagcat cctcagtttg aagaaatata caatcgtaaa ttaagaggcg 2400 ttgtcattca cgctgctaaa tgtttgtttt atatgttttc aatgaatatg tatttagatg 2460 atcatttctt tgctgatagc caaactgtgt cagatcaaac atttcaaaca ggattttttg 2520 ctacttcagc tcagcatacg ttgttcttaa gtttgttttt acttaatttg gagagaaaat 2580 tcttttcggt tcttgataat aggttagttt cagttatgca ttctgttatg ggagatgatg 2640 ttttggaagt gatcaaaaat ggtgtcaaat ttcctgaagt agttcgcaaa tggttgtccc 2700 tacgtaaaaa tgatttatca aagttaaatt acgaagaaga attatcatta tctagaatgt 2760 atggtgtctt tttacaacaa gcagcattgt taggcgtgta tgtaccttat ccctccagaa 2820 tgtcgttatt ttgtgatgaa agatctgata ctacgaagag acatacacta gatatgatta 2880 aaataataat ggatgtgata tcagctaaag ctcaacgatc ttatggtatt gataatggat 2940 tgagtattgg ttatagtatt tggagttgtc atcgaagctc acgctacatt tattctaatg 3000 ctgataaaat taaaatatct aaattgattg aaatgaacaa aaattttggt tttaatttta 3060 tagtgtccca caatgttgtc gaacaatcta ttcgttttat atatcctttt gttactgtca 3120 tgtgttctcc gatttcttgg cctatgttaa ctttcgccat gccagatgtt tccgatagta 3180 ataaaatatt aacttataga agtaaagctt tcacttctct caatggtgac ggtgcttaca 3240 tgttgattaa tcagatgttt tttaccagta atgaacagca tatgtttcaa tttgttgatt 3300 atgtgaaaca tcaatctaaa gtggtagaat taaagttaaa ttccaatttt ttggattggg 3360 agactagaca caaatggggt ttcacgtttg gagaacattt gttacgtttc aaacgtcttc 3420 gtcatttgac tgaaagcaga aaaaatgaat taggattagg agacatagaa gttatggtac 3480 ataatttgaa caaatattta gatagtaata gagttcttat gagttttaac agtatctcgg 3540 ttctaaaatc acacaaaatt gaagttccat atggatcgat gtatgttaat cacaatcgtt 3600 ctaaaattga ccaatcttta actgttagag cagaatcttt ggaagaaaga gcgtttctcg 3660 attcagtttt tctcaaacat atattagatt acaatgttat tcctaaagat tcagaagtct 3720 tgaaaacaca cgcactgtgt gctgtcaaat taaggattta tggtgacttt gattattctt 3780 gtgaacgtga tggagtaatt gaacccagtc aagacgctca gttcaacatt ttacttcctt 3840 ttttacctgg ttatcatctc aacagtgctt atggtaaact attttcatac tccactttgc 3900 ctactgttca cgatagggat atttctggaa ctttgggaga gattacagga tctttaggtg 3960 cttcatttga tgtcgatgct gcaattgaat tcggtgcaca tgtttataac gtaaatccta 4020 gtttagttga tgccgctggc accgctattg gtattcccca aggattgctc aaccactaca 4080 aaaatttagt taatgctttt gtgatgaata attttaactt gaaatatcat tctatctttt 4140 taaatgtgaa atactttggt ctcaatggaa gtttaaaaca tttttctcaa tatggtgatt 4200 actctagccg tttagttcgt ttcgattcaa taaacaaatt agatagatac cataatgtat 4260 tcgtacgtga tttcattttt gcttatattc atgaattaaa tggccgtagg gtatatttag 4320 attatagtat tcatagtctt ttgctcgtta tgtcccgagg ttcaatcaag tactttacct 4380 ctcacctctc acagttattc aatcccatgc ttactctgga gttcgactga taaggtgttt 4440 ccaattctga aactgtgcag ttagcgtgcg ttgagtgtct atggcgggaa cagctgatgt 4500 c 4501 //