ID   AJ293570; SV 1; linear; genomic RNA; STD; VRL; 2761 BP.
XX
AC   AJ293570;
XX
DT   15-JUL-2000 (Rel. 64, Created)
DT   18-JUL-2001 (Rel. 68, Last updated, Version 3)
XX
DE   Kalanchoe latent virus gene for RNA replicase (partial), ORF2, ORF3, ORF4,
DE   gene for coat protein and ORF6 (partial), genomic RNA, isolate 1452
XX
KW   ORF1; ORF2; ORF3; ORF4; ORF5; ORF6; RNA replicase.
XX
OS   Kalanchoe latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-2761
RA   Nicolaisen M.;
RT   ;
RL   Submitted (13-JUL-2000) to the INSDC.
RL   Nicolaisen M., Plant Protection, Danish Institute of Agricultural Sciences,
RL   Forsoegsvej 1, Slagelse, 4200, DENMARK.
XX
RN   [2]
RX   DOI; 10.1023/A:1011101904002.
RX   PUBMED; 11450944.
RA   Nicolaisen M., Nielsen S.L.;
RT   "Analysis of the triple gene block and coat protein sequences of two
RT   strains of Kalanchoe latent carlavirus";
RL   Virus Genes 22(3):265-270(2001).
XX
DR   MD5; 5caeabfb7f2d4c246e864674d95193e8.
DR   EuropePMC; PMC3689765; 23805334.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2761
FT                   /organism="Kalanchoe latent virus"
FT                   /isolate="1452"
FT                   /mol_type="genomic RNA"
FT                   /note="carlavirus"
FT                   /db_xref="taxon:132477"
FT   CDS             <1..393
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="RNA replicase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:Q9ICX3"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICX3"
FT                   /protein_id="CAB97496.1"
FT                   /translation="FAGDDMCSNTRLHVSSKHEGFLKKLKLKAKVAHTANPTFCGWNLC
FT                   PDGIFKKPQLVFERLCIAKETNNLVNCIDNYAIEVAYAYQMGEKAIARMNEEEVDAFYN
FT                   CVRVIIKNKHLLKSDIRLIYESGKIQ"
FT   CDS             420..1106
FT                   /transl_table=1
FT                   /product="hypothetical protein, 25K"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q9ICX2"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICX2"
FT                   /protein_id="CAB97497.1"
FT                   /translation="MDVFVSYLNKYKFVRLTSCITPPIIVHSVPGAGKSSLIRELINSD
FT                   KRFSAFTFGKEDCQTITGVRINKATENLESREFCIFDEYLEGDLPAWAFAAFADPLQGG
FT                   SGEVQRAHFIKEESHRFGKCTAQLLRELNFSITASGEDIVQIRGLYEVDPQDTIIFYER
FT                   EVGELLRAHCVEAFCIRDIRGQTFDSVTFVTANSKPIDRELSFQCLTRHRRSLLILSPD
FT                   ASYTGC"
FT   CDS             1084..1404
FT                   /transl_table=1
FT                   /product="hypothetical protein, 12K"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q9ICX1"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICX1"
FT                   /protein_id="CAB97498.1"
FT                   /translation="MPLTPAVNYSQVYISAVIGSAVAITLGLISRNTLPFVGDLQHSLP
FT                   HGGRYRDGTKVIDYFKPGKLNSFESRNSFKSQPWLLVILLIALIIGLSRRTNACPTCGR
FT                   QH"
FT   CDS             1386..1580
FT                   /transl_table=1
FT                   /product="hypothetical protein, 7K"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICX0"
FT                   /protein_id="CAB97499.1"
FT                   /translation="MWSSALIILISLLSFWSTSWIMESVSSAPCTIIITGESVRITGCF
FT                   LSAEHIRALSHLKALQVRL"
FT   CDS             1622..2476
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q9ICW9"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICW9"
FT                   /protein_id="CAB97500.1"
FT                   /translation="MAPKPEPENVASSSQPGGNQVANAGVAVPSREKVLEERLSKLIEM
FT                   LNNDMHNSNLKNISFEIGRPALEPTAQMKRNPANPYGRFSIDELFKMKIDVVSNNMATT
FT                   EQLAKIAADIAGVGVPSDLSRKVILKMVIMCASVSSSAFLDPDGSIEFSTGAVPVDSVA
FT                   AIMKKHAGLRKVCRLYAPIVWNSMLVRNQPPSDWQAMGFPYNARFAAFDTFDYVTNTAA
FT                   IQPVEGIIRRPTSEEVIAHNAHKRLALDRANRNDRLGNLETEYTGGIQGAEITRNHRNA
FT                   NNG"
FT   CDS             2460..>2761
FT                   /transl_table=1
FT                   /product="hypothetical protein, 11K"
FT                   /note="ORF6"
FT                   /db_xref="GOA:Q9ICW8"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICW8"
FT                   /protein_id="CAB97501.2"
FT                   /translation="MQTMGESKSWKKAVIFSLYNKLPLCLCVHIMRRASNRCVGTGRST
FT                   YARRRRAISIGRCERCFRCYPPICNSXCDNKTCFPGISSNEKVVNFIRYGVTEVIP"
XX
SQ   Sequence 2761 BP; 745 A; 626 C; 676 G; 710 T; 4 other;
     tttgctggtg atgacatgtg ttccaacaca agactgcatg tgagctcaaa gcacgagggg        60
     tttctcaaga agttaaagct caaagccaag gtagcgcaca cagcgaatcc tacgttttgc       120
     ggatggaatc tgtgccctga tggcatattt aagaagccgc aattggtatt cgagcgtctt       180
     tgcatcgcca aagagacaaa taacttggtc aactgcattg acaactatgc tatcgaggta       240
     gcgtatgcat accagatggg tgagaaagct attgctcgga tgaacgagga agaggttgac       300
     gctttctaca attgcgtcag agtcatcatc aagaacaagc acctgctcaa gtcggacatt       360
     cgtctcatct acgagtcagg gaaaattcaa tagcttaggt gttcgcttct agattgtata       420
     tggatgtgtt tgtgagttat ctgaataagt ataaatttgt acggttaact agttgcatta       480
     cacctccgat tatcgttcac agtgttccgg gcgctggtaa gagtagttta attagggaat       540
     taataaatag tgataagaga ttttctgcct tcaccttcgg taaggaagat tgtcagacga       600
     tcactggtgt gcgaattaac aaggccactg aaaacttaga gtctcgagag ttctgcatct       660
     ttgacgaata cttagaaggg gaccttccag cctgggcatt cgccgcattt gcggacccac       720
     tgcaaggtgg aagtggtgaa gtccagcggg cacacttcat taaggaagaa tcgcatcgct       780
     ttggcaagtg taccgcacag ctactccggg aacttaattt ctccattact gcgagtggtg       840
     aagacatcgt gcaaatacgt gggctgtacg aagtggaccc tcaagacact ataatatttt       900
     acgaacgcga ggtcggggaa cttttgcggg ctcactgcgt cgaggcgttc tgtatccgcg       960
     atatcagagg tcaaactttc gatagtgtca cttttgttac agctaattcc aaaccaattg      1020
     atagagagct cagcttccag tgcctcacaa ggcacagacg ttcattgctc atactaagcc      1080
     ctgatgcctc ttacaccggc tgttaattac tcacaagtgt acatttcagc agttattggc      1140
     tcagcagtag ccatcacact aggcctcatt tccagaaaca ccttgccgtt tgttggggat      1200
     ttacagcata gtttgccgca cggcggtagr tatmgggayg ggaccaaagt tatcgattac      1260
     ttcaagccag ggaaactaaa ctctttcgag tcgcgcaact cattcaagtc acagccctgg      1320
     ttgcttgtta tcctactcat tgcgcttatc atcggactca gcagaaggac aaatgcatgc      1380
     ccaacatgtg gtcgtcagca ctaatcatat tgatttcatt gctaagcttc tggtcgacct      1440
     catggataat ggagagtgtg tcatcggctc cctgcacgat tatcatcacg ggggagtcgg      1500
     tgagaattac gggatgcttt ttgagcgcag aacatataag agctttgagt cacctgaagg      1560
     cgctacaagt gcgcctttag gtttgcaggc aggtaatcgt tatactttac accttgatat      1620
     catggcacca aaaccagaac cagagaatgt ggcatcatca tctcaacccg gcggtaatca      1680
     agtggcgaac gcaggcgtgg cagtaccttc ccgtgagaaa gtattagagg agagattgtc      1740
     caagctcatt gaaatgctca ataatgacat gcacaactcc aacctcaaga acatctcctt      1800
     cgagatcggg agaccagcac ttgagcctac cgcacagatg aagcggaacc ccgcaaatcc      1860
     atacgggaga ttctcgatcg atgaactctt caagatgaaa attgatgtcg tctctaacaa      1920
     catggcaacc actgaacagc tggccaaaat cgcagcggac atcgcagggg taggcgttcc      1980
     atcggacttg tcgcggaagg tcattttgaa gatggtcatc atgtgcgcta gcgtcagcag      2040
     ctctgcattt cttgatccag atggtagcat cgagttcagc acaggagctg tgcctgttga      2100
     ctcggtcgca gcaatcatga agaaacatgc agggctaagg aaggtttgcc gattgtacgc      2160
     gcctattgtc tggaatagca tgcttgttcg caatcaacca ccctcagact ggcaggccat      2220
     gggttttcca tacaacgcgc gctttgctgc atttgataca ttcgactacg tcacaaatac      2280
     tgcagctata cagccagttg agggcatcat tcggagaccc acttctgaag aagttattgc      2340
     gcacaatgca cacaagcgct tggccctcga tcgggcgaat cgcaatgacc gccttgggaa      2400
     tctggagacg gagtacacag gtggtattca aggtgctgag ataactcgaa accatcgaaa      2460
     tgcaaacaat gggtgagtca aagtcctgga agaaagcagt gatatttagc ttgtataata      2520
     aattaccttt atgtttgtgt gtgcatatta tgcggagagc ctctaaccgg tgtgttggca      2580
     ctggacgttc tacttacgca agacgtcgca gagctatttc catcggtagg tgtgagaggt      2640
     gtttccgctg ctatcctcct atttgcaatt ccragtgtga taataaaacc tgctttcccg      2700
     ggatttcctc caatgaaaaa gttgtcaatt tcatcaggta cggagtaacc gaggtgatac      2760
     c                                                                      2761
//