ID   AJ293279; SV 1; linear; genomic RNA; STD; VRL; 1709 BP.
XX
AC   AJ293279;
XX
DT   06-FEB-2001 (Rel. 66, Created)
DT   11-MAY-2001 (Rel. 67, Last updated, Version 4)
XX
DE   Turnip mosaic virus partial genomic RNA for viral polyprotein
XX
KW   coat protein; NIb replicase; viral polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1709
RA   Adams M.J.;
RT   ;
RL   Submitted (07-SEP-2000) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RX   DOI; 10.1007/s007050170144.
RX   PUBMED; 11402861.
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146(4):757-766(2001).
XX
DR   MD5; 1cc57fdb4ed2d71ec7fea1bfb009825a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1709
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica juncea"
FT                   /isolate="Hangzhou"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1500
FT                   /codon_start=1
FT                   /db_xref="GOA:Q998R4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q998R4"
FT                   /protein_id="CAC28541.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAVNYSLKKSGSPSELRDSIIRFFVNG
FT                   DDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKL
FT                   EPERIVSILEWDRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQ
FT                   EGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGTEACVYHQAGETLDAGLTD
FT                   EQKQAEKEKKEREKAEKERERQKQLALKKGKNVAQEEGERDKEVNAGTSGTFSVPRLKS
FT                   LTSKMCVPRYKQRVALNLDHLILYTPEQTDISNTRSTRKQFDTWFEGVMADYELTEDKM
FT                   QIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVA
FT                   EAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALR
FT                   GANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..633
FT                   /product="NIb replicase"
FT   mat_peptide     634..1497
FT                   /product="coat protein"
FT   3'UTR           1501..1709
XX
SQ   Sequence 1709 BP; 527 A; 347 C; 447 G; 388 T; 0 other;
     ggcaacaata gtgggcaacc atcgaccgtt gtagacaaca cgctcatggt catactggca        60
     gtcaactatt cactcaagaa aagtggaagt ccaagtgagt tgcgcgacag catcatcaga       120
     ttcttcgtca acggagatga tttactgcta agcgtacacc cagagtatga gtatatcctt       180
     gacactatgg cagacaactt tcgtgaactg ggcctgaagt acactttcga ctcaaggacc       240
     agggaaaaag gagacctttg gttcatgtcg caccaagggc acaaaagaga gggaatctgg       300
     attcccaagc tcgagccaga gcgaatagta tcaattctag aatgggatcg gtcgaaagag       360
     ccatgccatc gactagaggc aatctgcgca gcgatgattg agtcgtgggg atacgacaag       420
     ttaactcacg agatacgcaa gttttacgcg tggatgattg aacaagctcc atttagctcc       480
     ctagcacaag aagggaaagc tccttacata gcggaaacgg cgctgaggaa gctctacctc       540
     gataaggaac cagctcaaga ggatctcacc cattatttgc aagcaatctt tgaggattat       600
     gaagatggta ctgaggcttg tgtttatcac caggcaggtg agacgcttga tgcaggtttg       660
     acagatgagc aaaagcaggc ggagaaggag aagaaggaga gagagaaggc agaaaaggaa       720
     cgagagaggc agaagcagtt ggcactcaag aaaggcaaga atgttgcaca agaagaggga       780
     gaacgcgaca aggaagtgaa cgctggaacc tctggaactt tcagtgtacc cagacttaag       840
     agtctgacaa gcaagatgtg cgtgccaaga tacaagcaaa gagtggctct aaacctcgat       900
     catctaatcc tgtatacgcc ggagcagacg gatatatcca acacacgttc aacgcgaaag       960
     cagtttgaca catggtttga aggtgtaatg gctgattacg aactgacgga ggacaaaatg      1020
     caaatcattc tcaatggttt aatggtctgg tgcattgaga acggaacctc cccgaacata      1080
     aacggaatgt gggtgatgat ggacggcgat gatcaggtgg aattcccgat caaaccgctc      1140
     attgaccacg ccaaacccac atttaggcag ataatggccc atttcagtga cgtagctgaa      1200
     gcgtacattg aaaagcgtaa ccaagaccga ccatacatgc cacgatatgg tcttcagcgc      1260
     aatttaaccg acatgagctt agctcgatac gcgtttgatt tctatgaaat gacttctaga      1320
     actccaatac gtgcgagaga agcacacatc cagatgaaag cagcagcact gcgtggcgca      1380
     aataacaatt tgttcggctt ggatggaaac gttggtacaa cggtagagaa cacggagagg      1440
     catacgaccg aggacgttaa tcggaacatg cataacttac ttggcgttaa ggggttatga      1500
     agttgtatgc tggtagacta taagtattta agtttactcg ttagtattct cgcttatggg      1560
     aaatatgtaa gtttgttaaa gcagccagtg tgacttcgtc atgtgtgttg ttgttacttt      1620
     ctatattttc gccgaacatt ttattggtgt tagcgcatgt ggtgaggatc gtcctcgatt      1680
     gccttaacat ttgataggat gcaagggac                                        1709
//