ID   AJ293278; SV 1; linear; genomic RNA; STD; VRL; 1625 BP.
XX
AC   AJ293278;
XX
DT   06-FEB-2001 (Rel. 66, Created)
DT   11-MAY-2001 (Rel. 67, Last updated, Version 4)
XX
DE   Onion yellow dwarf virus partial genomic RNA for viral polyprotein
XX
KW   coat protein; NIb replicase; viral polyprotein.
XX
OS   Onion yellow dwarf virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1625
RA   Adams M.J.;
RT   ;
RL   Submitted (07-SEP-2000) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RX   DOI; 10.1007/s007050170144.
RX   PUBMED; 11402861.
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146(4):757-766(2001).
XX
DR   MD5; fe13276ca26e68ef775af11966d24d9f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1625
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="garlic"
FT                   /isolate="Nanjing"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu"
FT                   /db_xref="taxon:43130"
FT   CDS             <1..1377
FT                   /codon_start=1
FT                   /db_xref="GOA:Q998T2"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q998T2"
FT                   /protein_id="CAC28532.1"
FT                   /translation="GNNSGQPSTVVDNTIMVMLSVQYALRKCGIDLDKQGNIIKYFCNG
FT                   DDLLIAIHPDHETILDRFKQYFHELGLDYDFSSRSKSKEDVYFMSHRGLLRDGIYIPKL
FT                   DKERVVSILEWDRADKPEHRLEAICASMIEAWGYPDLVHEIRKFYQWLLEQAPYNMIAQ
FT                   DGKAPYIAETALKKLFTNIDASEAELEQYYEMYLALEDQEQIIREVRYQAGDTEDAAAQ
FT                   SSDARRITKQKDKDVDAGTTGKFTVPRIKALSDKMRFPKVGKNVVLNAEHLLAYKPEQI
FT                   ELYNTRATQRQFENWFMAVKKEYDVDDEQMKILLDGLMVWCIENGTSPNLSGNWTMMDG
FT                   DEQVEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGIQRNLTELSLA
FT                   RYAFDFYEMTSKTPKRAKEAHMQMKAAAVRGATNRLFGLDGNVNTTEEDTERHTAADVN
FT                   "
FT   mat_peptide     <1..636
FT                   /product="NIb replicase"
FT   mat_peptide     637..1374
FT                   /product="coat protein"
FT   3'UTR           1378..1625
XX
SQ   Sequence 1625 BP; 539 A; 285 C; 395 G; 406 T; 0 other;
     gggaataaca gcgggcaacc atctacagtc gttgacaaca caataatggt aatgttgagt        60
     gtacaatatg ccctacggaa gtgtggtatt gatttagata aacagggtaa tatcataaag       120
     tatttctgta atggggatga tttgttgata gcgatacatc cggatcacga gactatactc       180
     gaccggttta aacaatactt ccatgagcta gggttggatt atgatttctc gagtagaagc       240
     aagtcgaaag aggacgttta cttcatgtca catagaggat tactcaggga tggaatttac       300
     attccaaagt tggataagga gcgtgttgtg tcaattctcg agtgggatcg agcagataag       360
     cccgagcacc gattggaggc tatatgtgca tctatgattg aagcatgggg ttatcccgac       420
     ttggtgcacg aaataaggaa attttatcag tggttgctag aacaagctcc gtacaatatg       480
     atagcgcaag atggtaaagc tccgtacata gcagagacag ctcttaagaa gctatttacc       540
     aacattgatg cgagtgaggc cgaacttgaa caatattatg agatgtatct agcactggaa       600
     gatcaagaac aaattattag ggaagtccga taccaagctg gagatacaga agatgctgca       660
     gcacaatcga gcgatgcaag gcgaatcaca aagcagaaag ataaggacgt tgatgctgga       720
     acaactggga aattcacagt acctagaatc aaagcgcttt ccgataaaat gcgatttcct       780
     aaagtcggaa agaatgtagt actcaatgcg gagcatctat tagcgtataa accagaacaa       840
     atagagctgt acaatacgag agcgacacaa cgccaatttg agaattggtt tatggcagtg       900
     aagaaggagt acgacgtgga cgatgaacaa atgaaaattt tactggatgg gctaatggtt       960
     tggtgcattg aaaatggtac atctccaaac ctgtcaggta attggactat gatggatggt      1020
     gatgaacaag ttgagtatcc attagcacca gttttagata atgctaaacc aacgtttaga      1080
     cagataatgg cgcacttcag tgatgcagct gaagcataca ttgaataccg aaacgccacc      1140
     gaaaaataca tgccccggta tggaattcag cgcaatttaa cagaattaag tttagcacgt      1200
     tacgcattcg acttttatga gatgacttcg aaaactccga agcgagcgaa agaagcacat      1260
     atgcaaatga aggcggcagc ggttagaggg gcaactaatc gcttgtttgg cctcgatggt      1320
     aacgtaaaca ccacagaaga ggacacggaa agacacacgg cggcagatgt gaattaaaat      1380
     cagcacacgt tgctgggcat caagatgtaa acccgcacca atgtgtcttt agtcttatat      1440
     aaatatatat atataaggac gtatgtaata tgtaattctc ttcgtttcgt ttaacctgac      1500
     tttgagcagt aaaatgtggt gtaccactag ctgtggcaaa cgatacggtt aaacatctgt      1560
     gattaatgtt gagcttcatg agtgtggtat tccacgaggt gaatcttagc gtgaattaca      1620
     gagac                                                                  1625
//