ID AJ292229; SV 1; linear; genomic RNA; STD; VRL; 8319 BP. XX AC AJ292229; XX DT 06-FEB-2002 (Rel. 70, Created) DT 06-FEB-2002 (Rel. 70, Last updated, Version 1) XX DE Garlic virus X complete genomic RNA, isolate YH XX KW coat protein; nucleic acid binding protein; ORF1; ORF2; ORF3; ORF4; ORF5; KW ORF6; RNA-dependent RNA-polymerase; serine-rich protein; TGB1 protein; KW TGB2 protein; TGB3 protein. XX OS Garlic virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-8319 RA Adams M.J.; RT ; RL Submitted (24-JAN-2001) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s007050170037. RX PUBMED; 11722009. RA Chen J., Chen J.P., Adams M.J.; RT "Molecular characterisation of a complex mixture of viruses in garlic with RT mosaic symptoms in China"; RL Arch. Virol. 146(10):1841-1853(2001). XX DR MD5; abee10ebd9e663681f89cd94a5c61c35. XX FH Key Location/Qualifiers FH FT source 1..8319 FT /organism="Garlic virus X" FT /host="garlic" FT /isolate="YH" FT /mol_type="genomic RNA" FT /country="China:Zhejiang" FT /db_xref="taxon:150284" FT CDS 98..4732 FT /transl_table=1 FT /product="RNA-dependent RNA-polymerase" FT /note="ORF1" FT /db_xref="GOA:Q8QXX1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8QXX1" FT /protein_id="CAC83699.1" FT /translation="MTTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQ FT TEALTLERIGITTSPFATTSHTHAADKIIENDCLEIIGRYLPKEPVTLIQLKRAKLHLL FT KRGPNTDIFQNYCHEPKDVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRN FT PQLQRLYGTLVLPIEALNKLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWL FT STAQIGTESNHLSIEKIETKGAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYP FT SEANVQRAYPHIFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLLGKLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVY FT FTTKPIRRPICGQPWFDETEMESKPETPTITGYLNPSPDDLDLLAEFEQHERVTMEEDY FT TTSRTKVTSNRAQNTQQCPEHVTSENLAHSNDEAHTQIPKSQGENDHTRSTEQSRPTNT FT CEKFADDGDMMDGHITDWTDSDSDHDDADSETHPETDLSQTINDDMLPDMSDLPELESI FT ADEQGDAEDNEDPANDQADHCNTTHDAETDKPATTPVEVESSPKITSRVDLTPLDSDTV FT EILRLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCY FT NYTLDARRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRKVGLIVIHGAGGAG FT KSRALQEILRSNSIDTNEVNIIVPTINLAVDWKKKMPKIDPRRVMTFEKACEREGKSVV FT IMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRY FT CDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGR FT QAMTYAGCQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTYSNNKDFLDKL FT DSTPYLKTLISGVREDEQAGAEFPPPEPEVRDAPTKTHIPVANNNVQLESKIETMEDKD FT TRELWSGEEKTNLMQTQDPVIQLFPHQQAKDEALFKITINERIKLANPETNCKALKETL FT NTGNLLFEAYASFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGARRQDPDFP FT ENAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKRESHQPDNI FT FVMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDSAFLNFELRKAKHFGLPDEVV FT DFYAFIKTHAKTFLGNLAVMRLSGEGPTSDANTECNIAYDALRFQLDSTVNACYAGDDL FT VRDKACDERPGWKYAEPLFSLKAKPLVTSKPDFCGWRLTKYGIVKSPVQLYQSLQLALR FT LGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGMQPPSSGEHLP FT TFRVTSDRLIRDPKAVKVLSYEADRIIVPTDVFEDHFTSDSRTDRDDMTAESNRRSSGL FT CAPANPGDSTGTLLTDLFPSIATL" FT CDS 4822..5547 FT /transl_table=1 FT /product="TGB1 protein" FT /note="ORF2" FT /db_xref="GOA:Q8QXX0" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8QXX0" FT /protein_id="CAC83700.1" FT /translation="MFNFVCEMKTQLLIQLLNNFGFHRTAEPIKEPLIVHGVPGCGKST FT LIKTLITHQSVAAYTLGVPYGKTLAHPGVLNPPTLETILDFETRILDEYQLGDKEDFKT FT LNILFGDPFQGDTHLPAHFIKSLSHRVPRQICQFLNSLQYEIQGEKEGILNHLPVFKTN FT STGPKGVVLHLGPISCQLTRTYRVASKTPAEVQGLEFKEVTLVYHSSELIANPNAFFIA FT ATRACDCLNLITDKVLHNP" FT CDS 5544..5864 FT /transl_table=1 FT /product="TGB2 protein" FT /note="ORF3" FT /db_xref="GOA:Q8QXW9" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8QXW9" FT /protein_id="CAC83701.1" FT /translation="MSFTPPPDHSKSFLALAAGAAAGLLIFTLRSNQLAPVGDNTHQLP FT HGGQYRDGNKFVNYNGPNTGASSHSIWWPAIAAITLTVVIHFLSSTRRRICVRCTESTL FT PH" FT CDS 5966..7036 FT /transl_table=1 FT /product="serine-rich protein" FT /note="ORF4" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:Q8QXW8" FT /protein_id="CAC83702.1" FT /translation="MTHATAWHLYETQNYIVDHINMIISQIALRVSDARDAATHQQQFL FT DYKIREIVPALDAITTSISVRTQNNAQNIQNRRSSDLSAELRQSTINRTFFTNLDAALD FT TTSNLINHVPPTRYALPSVSLPLDELYGLLHALHRNSLEWLTHISHDTEQIINKLNNIE FT TILLSEVRTNSRKIDTVLEKLANVETHLGKSANSNFERELAKSLASIETQVQELHARFR FT EMNHQGCSTLGGSPSTSSIPESSVINSLLPTFNPEHPTARCRAYGSVEFGGAVLQIPMD FT VRGRRASTALRLSVKYTPKREATTVKYKLFDDGALLFTEELSTQHQFTQPFNDSLALLH FT SKCPNFLYKIRDDVLC" FT CDS 7081..7812 FT /transl_table=1 FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:Q8QXW7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8QXW7" FT /protein_id="CAC83703.1" FT /translation="MGDRNQGINTNQGLNAQAQGDGTSNQNQRPNRNPPPRPQADLNAQ FT NNVMPSENDLAAIASDVISNSVATQETIREILSTLQARRPNATPKDLFSLAWACYHNGS FT SRFTIMTTDAPCGMPHAELKDLVEDHCTLRQFCGYYAKTCYVTGKQQNKPPANWSRKGF FT QEESKFAAFDFFNAVMSDSSPTPPGGMRFKPTHEEIVGHSMNAKMSIIESRKASNMVST FT RADLLAQQQIHETPKPLMLTF" FT CDS 7823..8206 FT /transl_table=1 FT /product="nucleic acid binding protein" FT /note="ORF6" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q8QXW6" FT /protein_id="CAC83704.1" FT /translation="MHRYDFNLLACLHFSKPTLPNDVRIIIYNLTLNSRKLGRKAQQNK FT PFTGTSKCAARRRAKRYGRCFDCGALLEANHVCKLFTTRSNSDCLSVIHEGPAKLYAER FT SFRKSSFAEQLMRNDLQLMKLYK" XX SQ Sequence 8319 BP; 2560 A; 2123 C; 1749 G; 1887 T; 0 other; gaaaatcaaa caaccacaaa ctaaactaca cagaacaaac ctcaacacta cttgataagg 60 agacttagca aagccctgaa catttagccc ttgaggtatg acaactgtgc agaagttact 120 cgatcaaatt tccgatccca acgctagggc ggcttattca caagactgtc tttctgctgc 180 caaaaatgcg gcaacgaaag cgatgaccat tgccccctac gctgtcacac agactgaagc 240 gcttacttta gagcgcattg ggatcaccac ttcacctttt gccacgactt cccacactca 300 tgccgccgat aaaattattg aaaatgattg tttagaaatt atcggtaggt acctgccaaa 360 ggagcccgtc acacttatac aactcaaacg ggctaagtta catttactga aaagagggcc 420 taacacagac atcttccaga attattgcca tgagcctaag gacgtactca gatttgggtt 480 aacgaacccc catgtatgcc ccgtggtgaa caccagctgt gcggtaatat ctgacacgct 540 ccattttatg tcgtcacaac aagtgtggac actgtttaag cgcaacccac aattacaaag 600 attgtatggt actctagtgc tgccgattga agcactcaat aagctaccca gcctattccc 660 tgaaatttac aaattagagt actatgacaa tcactttgcg tatatgcccg gtggtcatgg 720 aggcggagcc tatattcact cttatggcac acttaaatgg ctcagcacgg cacaaatagg 780 cacggagagc aaccacctta gcatcgagaa gattgaaacc aaaggcgcac accacataat 840 gctgatacag cggaggagac cagagttacc atggccatta ccgccactct gggttttcca 900 tgcttctgac tatgtgagac tacctgagat attctacccc agtgaagcta acgtgcagag 960 agcatacccc cacatattca tcaaacgtct ccagttgtac tgtttctctg tgaaagcagt 1020 gtcacttcgt gacatctttg cgaagatccg ccaagtgatc cctacagagg aattgtcgag 1080 attttcaaca gcagacttaa tacgactagc aaactaccta ctcttcataa cgggtatgca 1140 acaaaccagt gactatcagt cgccgttaat ggagagctta cttggaaaac tatgcttatc 1200 tatccgtgcc agggttcgtg agttcttcca gaacttgatg ggtaaatcct catacgccgc 1260 actgctcact gttacggacg tgagaccagt ctactttact actaaaccca tcaggaggcc 1320 aatatgcgga caaccgtggt ttgatgaaac ggagatggag agtaaaccgg aaacacccac 1380 aatcacgggc tacctaaatc catcaccaga tgacctagac ctgctcgccg aatttgaaca 1440 acatgagcga gttacaatgg aggaagacta cactacttca agaacgaagg tcacatcaaa 1500 ccgcgctcaa aacactcaac aatgcccgga acacgtgaca tctgagaatc tggcgcacag 1560 taatgatgaa gctcatacgc agatcccgaa gtcacaggga gagaatgatc acacgcggtc 1620 aacggaacaa tcgcggccca ccaacacatg cgaaaaattc gctgatgatg gggatatgat 1680 ggacgggcac atcacagact ggactgatag cgacagtgac catgacgacg cggacagtga 1740 gacacaccct gaaaccgacc tttctcaaac aatcaacgac gatatgctac ctgacatgag 1800 cgacttgcct gagttggaaa gcatcgcaga cgaacagggt gatgcagaag acaacgaaga 1860 ccccgcaaac gaccaagcgg accactgcaa cacaactcac gatgctgaaa ctgacaaacc 1920 agctactaca cccgtggaag tggagtcatc accaaagatc acttcacggg tggacttgac 1980 gcccctcgat agtgacactg ttgaaatact caggttacat ggatttacca actataaacc 2040 acaacatgac ggcgatttcc aaatagcccc agtattctac aatcatcaag cgtgtcaact 2100 acctttgtat gacggaatca cgaattctgt ccaatcaaaa tttatagaga tggcgcacgc 2160 gttgaagaga aattgctaca actacacatt ggacgcgagg cgagcaacgg ctttcatgtc 2220 tgacgttaag aacaatctga ctggattagt cctgccaaag ttggatcgag atttgctgac 2280 atcatgggta gccttgtctg agaatgcgtg taggaaagta ggtctcatag taatccatgg 2340 agcgggtgga gccgggaaaa gtagagcgtt gcaagagata ctgagaagca attcaattga 2400 cactaatgag gtcaacatca tagtaccaac aatcaatctc gctgtcgact ggaagaagaa 2460 aatgcccaaa attgatccac ggcgcgtgat gacgtttgag aaagcatgcg aacgtgaggg 2520 caaatcagtc gttataatgg atgattatgg caaactacca gctggatata ttgatgcata 2580 tctagcaatt aaattcaatg tagaaatagt catcctcact ggcgaccaga ggcagtccgt 2640 tttccataat gatcggaaag attcgcaaat cgccttgctg acatccaaca ctgctcattt 2700 caagcgatat tgcgactatt acctcaatgc tacacacaga caaccgcgaa gactagctaa 2760 ccccattcga gtgcacgcag agagagaagt gggaggagcc atcaaacatt ccacgcttat 2820 tcccacacac gctatgacac tcgtcccagc tttccgaagc caatcacttc ttacagattt 2880 gggcagacaa gctatgacgt atgccggatg ccaggggctt accttaccac acctaacaat 2940 agttttagat aaagacacac ccctctgctc tgatgaagtg ttgtacactg ccttgtcaag 3000 agcttcagaa acaatcacat ttgtcaacac atactcaaac aacaaggatt tccttgacaa 3060 gttagattcc accccatacc ttaaaacact aatctctgga gtgcgagaag atgagcaagc 3120 gggggcggaa ttcccaccac cagaaccaga ggtgcgagac gccccaacaa aaacacatat 3180 cccagtggcc aataacaacg tgcagcttga gagtaaaata gaaactatgg aagacaagga 3240 cactagagag ttgtggagcg gggaagagaa aacaaatctc atgcaaacac aagaccccgt 3300 aatccagctg tttccccacc agcaagccaa agatgaggcg ctctttaaaa tcacaataaa 3360 tgagagaatt aaattggcga atcctgagac aaattgcaaa gctctcaaag aaactctcaa 3420 cactggaaac ttgctgtttg aggcctacgc cagtttcatg aatgtaccgc gggaaactca 3480 gccattcgac aaaagacttt gggcccactg caggcaactt gctctacgca catatctctc 3540 aaaaccaacg tcgaatttgc aacaaggagc gcggcgtcaa gatccagact tccccgagaa 3600 cgctatcgcg ctgttcaata agtcacaatg ggttaagaaa cttgaaaaag ttggatgcaa 3660 atttaaggcg gggcaaacta tatcagcctt caaacagtca actgtcctac tcacaaccac 3720 catggctctg tacttaagga agaagcgaga aagtcaccag cccgacaata tctttgtgat 3780 gtgcgaaaag acgccagaac aattcaattc attcgttctc actaaatggg atttcacaag 3840 gcctaactac acatccgact acacgcagta tgaccaatcg caagactcgg cgttccttaa 3900 tttcgaatta aggaaagcta aacactttgg tctgccagac gaagtcgtgg acttttacgc 3960 attcatcaag acacatgcca aaacattcct ggggaatcta gcagttatga ggctaagtgg 4020 cgaagggcct acttctgacg cgaatacaga atgcaatata gcatacgacg ccctcagatt 4080 tcaacttgat tcaacagtga atgcttgcta cgctggggat gacctggtgc gtgataaagc 4140 atgcgacgag cgcccggggt ggaagtatgc agaaccacta ttttcactaa aagcgaaacc 4200 tctagtgact agcaagccag atttttgcgg gtggcgattg accaagtatg gaattgttaa 4260 atctccagta cagttgtatc aatcattgca acttgcgcta cgacttggta aggttgagga 4320 agtcaagcga agctacgcca tagactacct gttcgcgtat cgacttggag accagcttta 4380 cgacatattt gacgaggacg aactagcgaa acaccagctg gtcacaagga ccttgatcaa 4440 gaaaggcatg cagccgccca gttcaggaga gcatttacca actttccgtg tgacatcaga 4500 ccggctcata cgagacccga aagcagttaa ggtgttgagt tacgaagcag acagaatcat 4560 agtccccact gacgtttttg aagatcactt cacatcagac agcagaacgg atcgcgacga 4620 catgacggct gaaagtaata gacggtcttc cggactatgc gctccagcca accccggaga 4680 cagcaccggc actctgttga cggacttgtt ccctagtatt gccacacttt aacttatttg 4740 acaattagca ctaacattaa ataggttagc ctagtgatag tacagtcaat tacactacga 4800 atagtcgcgt gctgattagt tatgtttaac tttgtgtgtg aaatgaaaac tcagctgctg 4860 atacaattgt taaataactt cgggttccac cgcaccgcag agccaattaa agaacctcta 4920 attgtacacg gagtgccagg ctgtggcaaa tcgacactta tcaagactct gatcacccat 4980 caatccgtgg cagcctatac tttaggagtt ccgtacggga aaacacttgc acaccctggc 5040 gttctgaatc cgcctaccct tgaaaccatt ctagatttcg aaaccagaat cttggacgaa 5100 taccagctag gtgacaaaga agacttcaaa accctcaata tcttgtttgg tgatcctttc 5160 cagggtgaca cacacttacc tgcgcatttt atcaaatctt tatctcacag agtgccgcga 5220 cagatttgcc aattcctcaa ttcattacag tacgagatac agggtgaaaa agaagggata 5280 ctcaaccatt tacctgtctt caagaccaat agcacgggac ccaaaggagt tgttctacat 5340 cttggcccca tttcctgcca gctcacacgc acatacagag tagcgtcgaa aacaccggct 5400 gaggtgcagg ggcttgagtt taaggaggtc acactcgttt atcattcaag cgaattaata 5460 gcaaatccaa acgccttctt tattgcggct acacgggcgt gtgactgctt aaacctcata 5520 accgacaagg ttctacacaa tccatgagct tcactccccc gccagatcat agcaaatcat 5580 tcttagcatt agccgcaggg gcagccgcgg gtttgttaat ttttaccctt cgaagcaacc 5640 agttagcgcc agtcggagat aatactcacc agctgccaca cggaggccaa taccgagacg 5700 gcaacaaatt cgtgaactac aacggtccaa acactggcgc ctcctcacac agtatctggt 5760 ggccagcaat cgccgcaatc acactcactg ttgtcataca tttccttagc agcactcgcc 5820 gccgcatttg tgtacgctgt actgaatcta ctctacccca ctaaaagtgg gtgtgtcata 5880 actataactg gttcgaccgt acaagtctct gaatgccctt tagaacaagt tcctgaaata 5940 gttaaagctt ttgcctggag cgcccatgac gcacgccacc gcctggcatc tttatgaaac 6000 gcagaactac attgttgatc acatcaacat gataattagc cagattgcac ttagagtcag 6060 cgacgcacgt gatgcagcca cacaccagca gcaattcctg gactataaaa ttagagaaat 6120 agttccggct cttgacgcga taacgacttc aatctccgtt agaacacaaa acaatgccca 6180 gaacattcag aacaggagat catctgatct aagcgctgaa cttcgccaga gcacaatcaa 6240 cagaacattc ttcacaaatt tggatgcagc gcttgacacc accagcaact tgattaatca 6300 tgttccacca accagatacg ctctgccgtc cgtttcactt cctttagatg aactgtacgg 6360 gttattgcat gcgcttcaca ggaatagtct ggaatggttg acgcacatta gtcatgacac 6420 ggagcaaata atcaacaaat tgaacaacat tgagaccatt ctgctcagcg aagtgcgcac 6480 caatagccgg aagattgaca ctgtccttga aaagctcgca aacgtggaga ctcacctggg 6540 caagagcgca aattcaaact tcgaacgaga gttggccaag tctttagcct ccattgagac 6600 gcaagttcaa gaactgcacg ctaggtttcg cgagatgaat catcaaggat gctccacact 6660 tggtggcagt ccaagcacat catctatccc ggaatcatcg gtcattaatt ctttattacc 6720 aactttcaat cccgaacatc ccacagctag atgccgggca tacggaagtg tagaatttgg 6780 cggcgccgtt ctccagatcc ctatggacgt tagaggccgg cgtgcaagca ccgcattacg 6840 tttgtccgtc aagtacactc caaaacgaga agcgaccacc gttaagtaca agttgtttga 6900 cgacggtgca ctactcttca ctgaagaact gagcacacag caccaattca cgcaaccatt 6960 caacgactct ttagctctcc tgcattcaaa atgtccaaat ttcctttata agatcagaga 7020 tgatgtacta tgttaagttc taaattaggc cgaattagtt agagcgaaca caaacaaacg 7080 atgggcgatc ggaaccaagg aataaatacc aaccagggac tcaatgccca agcgcaaggt 7140 gatggaacaa gcaatcaaaa tcaacgcccc aataggaatc cacctcctcg accccaagct 7200 gacttaaacg cccagaacaa tgtcatgcct tctgaaaatg acttagcagc gatagcaagt 7260 gatgtaattt caaactcagt agccacacag gagactatcc gtgaaatcct cagcaccctt 7320 caagcaaggc gacccaatgc aacccccaaa gacttatttt cgcttgcgtg ggcatgctac 7380 cacaacggat catcacgatt cacaataatg accactgacg caccttgtgg catgcctcac 7440 gcggagctca aagacctcgt tgaagatcac tgcacgctga gacaattttg tggttactac 7500 gccaaaacat gctatgtcac ggggaagcag caaaataagc cgccagccaa ctggtctcga 7560 aaaggtttcc aagaggaatc aaaatttgct gcctttgatt tcttcaacgc tgtgatgagc 7620 gactcgtccc caacaccacc tggcggcatg cggttcaaac caacacatga ggagattgtg 7680 ggacactcca tgaacgcgaa gatgtccatc attgagtcgc gtaaagcatc aaatatggtt 7740 tcgactcgcg ctgatctgtt ggcccagcag caaatccatg aaaccccaaa acccctcatg 7800 ctcacattct aaatcaaact aaatgcatcg ctacgacttc aacttgctcg cctgtcttca 7860 cttttcaaaa ccaacacttc caaacgacgt tagaataata atatataatt taactctcaa 7920 tagtaggaaa ttaggacgta aagcgcaaca aaataaacct ttcacaggga cttccaagtg 7980 tgcagcccgc cgcagagcga aacgctatgg ccgatgcttt gactgtggtg cactgctgga 8040 agctaaccat gtatgtaaat tatttacaac tcgttccaat tccgactgcc tgagcgtcat 8100 ccatgaagga cccgctaagc tatatgctga aaggtctttc cgtaaatcat ctttcgctga 8160 gcaactcatg cggaatgact tgcagttaat gaaattatat aaataggctc cgcccgagcc 8220 tcccactggg tttacagggc tctggacatg gacaaagaca cccatgtatg tttgttgaca 8280 ttactaaact tactttgtaa caacatttgt ccacgcgac 8319 //